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Apis mellifera
cluster # 1721 cluster # 1721       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1721#0 length = 579 sequences # 1  
 consensus_1721#1 length = 439 sequences # 1  
consensusID : consensus_1721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence 
                              [AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTTAAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCACCACCGAATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAATTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGTACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATATATATATATATATATATATATATATATATATATATTTATGTTCCGTTGTGAATATATTGATGTTAATAAATGATAATTGCTGGATTATTATCATCATCAAAGGAATTTTCAAAGGATTAATGTCGAAAGATAATAAGAAATTTGTGTAATATTGGCGNTGTATAGCTCTTCGTAGATTGCCAAAGAACGATAGAAAAATATGTAACTGAATTCCGTTCCTCTGTTCTTCCAAATCGAGAAAAAGAATCGAGAGAAAGAATATTACTGTGCACGATGAGG]

[+] EMBL BI505259             [AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTTAAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCACCACCGAATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAATTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGTACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATATATATATATATATATATATATATATATATATATATTTATGTTCCGTTGTGAATATATTGATGTTAATAAATGATAATTGCTGGATTATTATCATCATCAAAGGAATTTTCAAAGGATTAATGTCGAAAGATAATAAGAAATTTGTGTAATATTGGCGNTGTATAGCTCTTCGTAGATTGCCAAAGAACGATAGAAAAATATGTAACTGAATTCCGTTCCTCTGTTCTTCCAAATCGAGAAAAAGAATCGAGAGAAAGAATATTACTGTGCACGATGAGG]




>consensus_1721#0
AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTT
AAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCACCACCG
AATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAA
TTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGT
ACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATA
TATATATATATATATATATATATATATATATATATTTATGTTCCGTTGTGAATATATTGA
TGTTAATAAATGATAATTGCTGGATTATTATCATCATCAAAGGAATTTTCAAAGGATTAA
TGTCGAAAGATAATAAGAAATTTGTGTAATATTGGCGNTGTATAGCTCTTCGTAGATTGC
CAAAGAACGATAGAAAAATATGTAACTGAATTCCGTTCCTCTGTTCTTCCAAATCGAGAA
AAAGAATCGAGAGAAAGAATATTACTGTGCACGATGAGG

consensusID : consensus_1721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence 
                              [AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTTAAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCGCCACCGAATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAATTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGTACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATATATATATATATATTTATGTTCCGTTGTGAATATATTGATGTTAATAAATGATAATGCTGGATTATTATCATCATCAAAGGAATTTTCACGATTAATGTCGAAAGATTATATAAAAAATTTGTGTAATATTGGCGGTGTA]

[+] EMBL BI510043             [AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTTAAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCGCCACCGAATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAATTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGTACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATATATATATATATATTTATGTTCCGTTGTGAATATATTGATGTTAATAAATGATAATGCTGGATTATTATCATCATCAAAGGAATTTTCACGATTAATGTCGAAAGATTATATAAAAAATTTGTGTAATATTGGCGGTGTA]




>consensus_1721#1
AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTT
AAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCGCCACCG
AATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAA
TTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGT
ACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATA
TATATATATATATTTATGTTCCGTTGTGAATATATTGATGTTAATAAATGATAATGCTGG
ATTATTATCATCATCAAAGGAATTTTCACGATTAATGTCGAAAGATTATATAAAAAATTT
GTGTAATATTGGCGGTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1721#0      AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTT 60
consensus_1721#1      AAAAAAACTCGGTGCTTTCGAAGATTTCTCGAACACTGTGTACATTTTACCGTAGCTGTT 60
                      ************************************************************

consensus_1721#0      AAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCACCACCG 120
consensus_1721#1      AAGATATCTGCGAATGTGATTCGCATTTTATGAGCTTCTTTGAAGAGAAATGCGCCACCG 120
                      ***************************************************** ******

consensus_1721#0      AATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAA 180
consensus_1721#1      AATTACTTCCAACTATACGTTTGTATGTTGGACGAGAGCATAATAAAATGATAAGTTTAA 180
                      ************************************************************

consensus_1721#0      TTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGT 240
consensus_1721#1      TTGTTTAATTAAAAACCATTATATTATCACTTTGATTAAGTATTTTTACGAACTTCACGT 240
                      ************************************************************

consensus_1721#0      ACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATA 300
consensus_1721#1      ACGCCCTTAAATATTTTTTACGTTAATTTTATGCCCATTTTTTTTTTATGTATATACATA 300
                      ************************************************************

consensus_1721#0      TATATATATATATATATATATATATATATATATATTTATGTTCCGTTGTGAATATATTGA 360
consensus_1721#1      TAT----------------------ATATATATATTTATGTTCCGTTGTGAATATATTGA 338
                      ***                      ***********************************

consensus_1721#0      TGTTAATAAATGATAATTGCTGGATTATTATCATCATCAAAGGAATTTTCAAAGGATTAA 420
consensus_1721#1      TGTTAATAAATGATAAT-GCTGGATTATTATCATCATCAAAGGAATTTTCAC--GATTAA 395
                      ***************** *********************************   ******

consensus_1721#0      TGTCGAAAGATAATA--AGAAATTTGTGTAATATTGGCGNTGTATAGCTCTTCGTAGATT 478
consensus_1721#1      TGTCGAAAGATTATATAAAAAATTTGTGTAATATTGGCGGTGTA---------------- 439
                      *********** ***  * ******************** ****                

consensus_1721#0      GCCAAAGAACGATAGAAAAATATGTAACTGAATTCCGTTCCTCTGTTCTTCCAAATCGAG 538
consensus_1721#1      ------------------------------------------------------------
                                                                                  

consensus_1721#0      AAAAAGAATCGAGAGAAAGAATATTACTGTGCACGATGAGG 579
consensus_1721#1      -----------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)