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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence
[GCTGATCGTTCGAGAGAATTAGTGCGGGTCTCTGTCTGTTCGCCGGACATTATATTATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAGCGGAGAGATAACAAAAATGGGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAGAGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCGTNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCGCGATCGACGATTCAG]
[+] EMBL BI504070 [GCTGATCGTTCGAGAGAATTAGTGCGGGTCTCTGTCTGTTCGCCGGACATTATATTATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAGCGGAGAGATAACAAAAATGGGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAGAGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGA ]
[+] EMBL BI507685 [ TTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTC ]
[+] EMBL BI506872 [ TTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCGTNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCGCGATCGACGATTCAG]
[-] EMBL BI508549 [ tttTTTTTGGTTTTGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAAGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTT ]
consensusID : consensus_173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 456 fasta sequence
[CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGAGCGTCGCTGTTTTCACAACACACGTGTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTCCGGGTTTCGATGAATAT]
[+] EMBL BI507910 [CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGATCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGAGCGTCGCTGTTTTCACAACACACGTGTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTCCGGGTTTCGATGAATAT]
[+] EMBL BI516368 [CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_173#0 ---GCTGATCGTTCGAGAGAATTAGTG--CGGGTCTCTGTCTGTTCGCCGGACATTATAT 55
consensus_173#1 CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAA---TGTGC 57
** **** ** * ** *** **** ** * * *
consensus_173#0 TATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGT 115
consensus_173#1 AAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGC 117
* ** ** *** * * * *** * * ** * * * * *
consensus_173#0 GTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAG 175
consensus_173#1 GTTTTCGAAAGTCACCGCGAGAGAAT-CGTACCAAAAAATGATTGAAGAAAAGAAAAGGA 176
** * * ** * * * * * ** * ** ** ** * ****
consensus_173#0 CGGAGAGATAACAAAAATG--GGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAG 233
consensus_173#1 AAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTG 236
* * **** ** ** * * ** ** ** ** * * * * ** **** *
consensus_173#0 AGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTG 293
consensus_173#1 CGTC---GATTATAAGATCATATATAGTAC-AAAGTAAACATATATTATTGTAATA---A 289
* ** * * * * *** *** * * * *** ** * ***
consensus_173#0 CTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATT 353
consensus_173#1 CGGTTTAAT--TAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAG----- 342
* ** ** ** *** * ** ********** ****** **** * *
consensus_173#0 TTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGC 413
consensus_173#1 --AGCGCGCGCGCGAGAGAGAGAGAGAGAG-AGCGTCGCTGTTTTCAC---AACACACGT 396
** * ** **** ***** ** * ****** * * ****
consensus_173#0 GAGCCATTCCCT-CGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGT 472
consensus_173#1 GTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTC--CGGGTTTCGATGAAT 454
* * * * * *** *** ** * * *** ** *** * * *
consensus_173#0 GTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATT 532
consensus_173#1 AT---------------------------------------------------------- 456
*
consensus_173#0 CCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAAT 592
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGA 652
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTG 712
consensus_173#1 ------------------------------------------------------------
consensus_173#0 GTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCG 772
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCG 832
consensus_173#1 ------------------------------------------------------------
consensus_173#0 CGATCGACGATTCAG 847
consensus_173#1 ---------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |