cluster # 1733

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Apis mellifera
cluster # 1733 cluster # 1733 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1733#0 length = 589 sequences # 1

consensus_1733#1 length = 573 sequences # 1

consensusID : consensus_1733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATTTGATACATATTTTTTTATGTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATATATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAATTATCTTTCCGGCAGTCATTTTATATTCCACGCTAGATCGTGTAATAATCATTATCAAATTGAGAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTACCAATTTCCTTACACCTTTCAGTTAGTACTTCGCCGATATAACATATTAAAAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATTATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCAATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATTATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATAACGGTAGC]

[+] EMBL BI505218             [CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATTTGATACATATTTTTTTATGTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATATATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAATTATCTTTCCGGCAGTCATTTTATATTCCACGCTAGATCGTGTAATAATCATTATCAAATTGAGAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTACCAATTTCCTTACACCTTTCAGTTAGTACTTCGCCGATATAACATATTAAAAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATTATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCAATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATTATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATAACGGTAGC]




>consensus_1733#0
CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATTTGATAC
ATATTTTTTTATGTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATATA
TTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAATT
ATCTTTCCGGCAGTCATTTTATATTCCACGCTAGATCGTGTAATAATCATTATCAAATTG
AGAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTACCAATTTCC
TTACACCTTTCAGTTAGTACTTCGCCGATATAACATATTAAAAATGTGTTTAAAGTTATA
TTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATTATGTTCAGACCATTCCTTA
GAATTCTCATATGATGTTCGATGATCACACTTATTTCATCAATGCGATTCTTATTTTCTT
TCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATTATAGTTAACTGACCAGAAG
CGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATAACGGTAGC

consensusID : consensus_1733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTACTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGAAGATATCATCATCAAATTAAAATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGTGTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAAAGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCATCATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCTGGGAGTTTTTAAACGAACAATCAAAATCGGCAACGATAGCATGGAAATATACGTTTTACCCTCTCCAACCTATAAAATTCCGGTTGATACCAATCCAGGGCACGATATCGTACTTGGTTTTCAATATGTGGCTGCATACATTACGAGCGCTACCGTTATTAGCGCTTTCAGCTTTGCTACGGTATTTGCATGCCACGCTTCTGGTCAGTTAACTATAATGATTATATGGATAG]

[+] EMBL BI507957             [TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTACTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGAAGATATCATCATCAAATTAAAATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGTGTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAAAGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCATCATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCTGGGAGTTTTTAAACGAACAATCAAAATCGGCAACGATAGCATGGAAATATACGTTTTACCCTCTCCAACCTATAAAATTCCGGTTGATACCAATCCAGGGCACGATATCGTACTTGGTTTTCAATATGTGGCTGCATACATTACGAGCGCTACCGTTATTAGCGCTTTCAGCTTTGCTACGGTATTTGCATGCCACGCTTCTGGTCAGTTAACTATAATGATTATATGGATAG]




>consensus_1733#1
TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTACTTGACACAACATCGG
GCTTATTACATTTCGTCCTCGTGAAAGAAGATATCATCATCAAATTAAAATCTCTGGCTC
CTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGTGTTGTTGCTTCGTAAAAATG
ATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAAAGTGATCACGAGGATGGCGG
ATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCATCATTTCTTGTTGCATCGTAG
GCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCTGGGAGTTTTTAAACGAACAA
TCAAAATCGGCAACGATAGCATGGAAATATACGTTTTACCCTCTCCAACCTATAAAATTC
CGGTTGATACCAATCCAGGGCACGATATCGTACTTGGTTTTCAATATGTGGCTGCATACA
TTACGAGCGCTACCGTTATTAGCGCTTTCAGCTTTGCTACGGTATTTGCATGCCACGCTT
CTGGTCAGTTAACTATAATGATTATATGGATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1733#0      CAAATTTATTCGACTATAATTAATAATATGCAATATTTATTTTGAATATATATT-TGATA 59
consensus_1733#1      ----------------TAACGACAAGGATTCTAATTCTTTTCTGCTGGACTATCGCGGTA 44
                                      ***  *  *  ** * *  * * ** **      ***   * **

consensus_1733#0      CATATTTTTTTAT-GTATTCAATACGTGTGCAATTTATAACATTGTTACTTGACGTAATA 118
consensus_1733#1      CTTGACACAACATCGGGCTTATTACATTTCGTCCTCGTGAAAGA---AGATATCATCATC 101
                      * *        ** *   * * *** * *     *  * * *     *  *  * * ** 

consensus_1733#0      TATTTAAATATCCAAAAACAGTTTTTATTATATTACCAAACGTGATCACTGACATATCAA 178
consensus_1733#1      AAATTAAA-ATCTCTGGCTCCTATAAGTTATATTCTTGGCGGAGGGCTCAATTATGCCGT 160
                       * ***** ***         * *   *******       * *  * *    **  *  

consensus_1733#0      TTATCTTTCCGGCAGTCATTTTATATTCCACGCTA--GATCGTGTAATAATCATTATCAA 236
consensus_1733#1      GTTGTTGCTTCGTAAAAATGATATACGCTACTGTATAGACCGCATAGAAGCCGATTGGAA 220
                       *   *     * *   **  ****  * **  **  ** **  **  *  *  *   **

consensus_1733#0      ATTGA----GAATATCTTTCTTAGGTAATCGATACCAATTTGTCATATAAACCATGTTAC 292
consensus_1733#1      AGTGATCACGAGGATGGCGGATCGGCAAGTGATGCTTAAAAATGCGAAAATTGGTCGCAT 280
                      * ***    **  **      * ** **  *** *  *    *   * **    *   * 

consensus_1733#0      CAATTTCC-TTACACC-----TTTCAG-----TTAGTACTTCGCCGATATAACATATTAA 341
consensus_1733#1      CATTTCTTGTTGCATCGTAGGCTTCATGCAACTTGGTACTTTTTTTTTTTGCACCATTCT 340
                      ** **    ** ** *      ****      ** ******      * *     ***  

consensus_1733#0      AAATGTGTTTAAAGTTATATTTATTACCGCCAAAATATATGTACTGAGAATCCTAATATT 401
consensus_1733#1      GGGAGTTTTTAAACGAACAATCAAAATCGGCAACG---ATAGCATGGAAATAT--ACGTT 395
                          ** ******   * * * *  * ** ***     **    **  ***    *  **

consensus_1733#0      ATGTTCAGACCATTCCTTAGAATTCTCATATGATGTTCGATGATCACACTTATTTCATCA 461
consensus_1733#1      TTACCCTCTCCAACCTATAAAATTCCGGT-TGATACCAATCCAGGGCACG-ATATCGT-- 451
                       *   *   ***  *  ** *****   * ****        *   ***  ** ** *  

consensus_1733#0      ATGCGATTCTTATTTTCTTTCTGTGACCGGTTTATAAATTCTTCTATCCATATAATCATT 521
consensus_1733#1      ACTTGGTTTTCAATATGTGGCTGCATACA--TTACGAGCGCTACCGTTATTAGCGCTTTC 509
                      *   * ** * * * * *  ***    *   ***  *   ** *  *   **      * 

consensus_1733#0      ATAGTTAACTGACCAGAAGCGTGGCATGCAAATACCGTAGCAAAGCTGAAAGCGCTAATA 581
consensus_1733#1      AGCTTTGCTACGGTATTTGCATGCCACGC--TTCTGGTCAGTTAACT-ATAATGATTATA 566
                      *   **        *   ** ** ** **   *   **     * ** * *  * * ***

consensus_1733#0      ACGGTAGC 589
consensus_1733#1      TGGATAG- 573
                        * ***

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)