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Apis mellifera
cluster # 1746 cluster # 1746       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1746#0 length = 520 sequences # 1  
 consensus_1746#1 length = 435 sequences # 1  
consensusID : consensus_1746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence 
                              [TACGTGTGAAGAGGTGCAAGTACACGTGTGTGCGTGCCACACGTATACTTGATGGTGTAACGATGCATATGAATTGTATAAATATATGTATGTATATCTAGATCCAAGACGAGTATATATATATATACCAATAAGGGAATCGTTTTGTACAAGTTATACAAACGTGTGATAAATATTCATACTTGGTATTTTGGAACGTTGATTTTAATTTGAATCGAGTTAACATCGATACGAAAATATTTCGTTAAGAAAAAAAAAAATGGTTCTTTTATTCCTCTTTGAAAAATTCTCATTTTTATCGTTCCAAAATAGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTTTAACTCGAATCGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAATGNNNCTTTTTCTTTTCTTTCTCTTTGAAAAATTTTCATTTTTGTCGTTCCAAAATGGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTCTAACTCGAATCGAGTTA]

[+] EMBL BI508667             [TACGTGTGAAGAGGTGCAAGTACACGTGTGTGCGTGCCACACGTATACTTGATGGTGTAACGATGCATATGAATTGTATAAATATATGTATGTATATCTAGATCCAAGACGAGTATATATATATATACCAATAAGGGAATCGTTTTGTACAAGTTATACAAACGTGTGATAAATATTCATACTTGGTATTTTGGAACGTTGATTTTAATTTGAATCGAGTTAACATCGATACGAAAATATTTCGTTAAGAAAAAAAAAAATGGTTCTTTTATTCCTCTTTGAAAAATTCTCATTTTTATCGTTCCAAAATAGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTTTAACTCGAATCGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAATGNNNCTTTTTCTTTTCTTTCTCTTTGAAAAATTTTCATTTTTGTCGTTCCAAAATGGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTCTAACTCGAATCGAGTTA]




>consensus_1746#0
TACGTGTGAAGAGGTGCAAGTACACGTGTGTGCGTGCCACACGTATACTTGATGGTGTAA
CGATGCATATGAATTGTATAAATATATGTATGTATATCTAGATCCAAGACGAGTATATAT
ATATATACCAATAAGGGAATCGTTTTGTACAAGTTATACAAACGTGTGATAAATATTCAT
ACTTGGTATTTTGGAACGTTGATTTTAATTTGAATCGAGTTAACATCGATACGAAAATAT
TTCGTTAAGAAAAAAAAAAATGGTTCTTTTATTCCTCTTTGAAAAATTCTCATTTTTATC
GTTCCAAAATAGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTTTAACTCGAAT
CGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAATGNNNCTTTTTCT
TTTCTTTCTCTTTGAAAAATTTTCATTTTTGTCGTTCCAAAATGGTATGAATATTCATAC
TTGGTATTTTGGAACGTTGATTCTAACTCGAATCGAGTTA

consensusID : consensus_1746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence 
                              [TTGGAACGTTGATTTTAACTCGAATCGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAAATGGTTCTTTTTTTTTTTCTTCCTCTTTGAAAAATTCTCATTTTTGTCGTTCCAAAATGGTATGAATTTGGACACGGGTTGCGTGTTCACGCGTTTCGCCGGTTTCTCGTCGATGGAATAGAGGCGCTACAAAGTGATCAGCAATAAACTAAACGCACAATAATCATNNNTAGGCGTTGTTCGTCAGTGGACCTAAACAGTTGTTGTACACGATATACCCGGTGAACGATATTATAGCTCCCTCCTCTGCATTTGTATTTTCACATCCAACGAGAGAAAGATCGAATTCAGAATTTTTTTTAAACGACACACCAATATTGCTACAAAAAGATAAACAAAAAGACTCGTAGAAAAAAAAAAAAA]

[-] EMBL BI514954             [TTGGAACGTTGATTTTAACTCGAATCGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAAATGGTTCTTTTTTTTTTTCTTCCTCTTTGAAAAATTCTCATTTTTGTCGTTCCAAAATGGTATGAATTTGGACACGGGTTGCGTGTTCACGCGTTTCGCCGGTTTCTCGTCGATGGAATAGAGGCGCTACAAAGTGATCAGCAATAAACTAAACGCACAATAATCATNNNTAGGCGTTGTTCGTCAGTGGACCTAAACAGTTGTTGTACACGATATACCCGGTGAACGATATTATAGCTCCCTCCTCTGCATTTGTATTTTCACATCCAACGAGAGAAAGATCGAATTCAGAATTTTTTTTAAACGACACACCAATATTGCTACAAAAAGATAAACAAAAAGACTCGTAGAAAAAAAAAAAAA]




>consensus_1746#1
TTGGAACGTTGATTTTAACTCGAATCGAGTTAACATCGATATATTTCGAGGATTTTCGTT
AAGAAAAAAAAAATGGTTCTTTTTTTTTTTCTTCCTCTTTGAAAAATTCTCATTTTTGTC
GTTCCAAAATGGTATGAATTTGGACACGGGTTGCGTGTTCACGCGTTTCGCCGGTTTCTC
GTCGATGGAATAGAGGCGCTACAAAGTGATCAGCAATAAACTAAACGCACAATAATCATN
NNTAGGCGTTGTTCGTCAGTGGACCTAAACAGTTGTTGTACACGATATACCCGGTGAACG
ATATTATAGCTCCCTCCTCTGCATTTGTATTTTCACATCCAACGAGAGAAAGATCGAATT
CAGAATTTTTTTTAAACGACACACCAATATTGCTACAAAAAGATAAACAAAAAGACTCGT
AGAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1746#0      TACGTGTGAAGAGGTGCAAGTACACGTGTGTGCGTGCCACACGTATACTTGATGGTGTAA 60
consensus_1746#1      ------------------------------------------------------TTGGAA 6
                                                                             ** **

consensus_1746#0      CGATGCATATGAATTGTATAAATATATGTATGTATATCTAGATCCAAGACGAGTATATAT 120
consensus_1746#1      CGTTGATTTTAACTCGAATCGAGTTA-------ACATC--GATATATTTCGAGGATTTTC 57
                      ** **  * * * * * **  *  **       * ***  ***  *   **** ** *  

consensus_1746#0      ATATATACCAATAAGGGAATCGTTTTGTACAAGTTATACAAACGTGTGATAAATATTCAT 180
consensus_1746#1      GT---TAAGAAAAAAAAAATGGTTCTTTTTTT-TTTTCTTCCTCTTTGAAAAATTCTCAT 113
                       *   **  ** **   *** *** * *     ** *       * *** ****  ****

consensus_1746#0      ACTTGGTATTTTGGAACGTTG---ATTTTAATTTGAATCGAGTTAACAT-CGATACGAAA 236
consensus_1746#1      TTTTGTCGTTCCAAAATGGTATGAATTTGGACACGGGTTGCGTGTTCACGCGTTTCGCCG 173
                        ***   **    ** * *    ****  *   *  * * **   **  ** * **   

consensus_1746#0      ATATTTCGTTAAGAAAAAAAAAAATGGTTCTTTTATTCCTCTTTGAAAAATTCTCATTTT 296
consensus_1746#1      GTTTCTCGTCGATGGAATAGAGGCGCTACAAAGTGATCAGCAATAAACTAAACGCACAAT 233
                       * * ****  *   ** * *            *  **  *  * **  *  * **   *

consensus_1746#0      TATCGTTCCAAAATAGTATGAATATTCATACTTGGTATTTTGGAACGTTGATTTTAACTC 356
consensus_1746#1      AATCATNNNTAGGCGTTGTTCGTCAGTGGACCTAAACAGTTGTTGTACACGATATACCCG 293
                       *** *    *     * *   *      ** *      ***          * ** *  

consensus_1746#0      G-AATCGAGTTAACATCGATATATTTCGAGGATTTTCGTTAAGAAAAAAAAATGNNNCTT 415
consensus_1746#1      GTGAACGATATTATAGCTCCCTCCTCTGCATTTGTATTTTCACATCCAACGAGAGAAAGA 353
                      *  * ***  * * * *    *  *  *    * *   ** * *   **  *        

consensus_1746#0      TTTCTTTTCTTTCTCTTTGAAAAATTTTCATTTTTGTCGTTCCAAAATGGTATGAATATT 475
consensus_1746#1      TCGAATTCAGAATTTTTTTTAAACGACACACCAATATTGCTACAAAAAGATAAACAAAAA 413
                      *    **      * ***  ***     **    * * * * ***** * **   * *  

consensus_1746#0      CATACTTGGTATTTTGGAACGTTGATTCTAACTCGAATCGAGTTA 520
consensus_1746#1      GACTCGTAGAAAAAAAAAAAAA----------------------- 435
                       *  * * * *      **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)