cluster # 1764

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Apis mellifera
cluster # 1764 cluster # 1764 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1764#0 length = 523 sequences # 1

consensus_1764#1 length = 487 sequences # 1

consensusID : consensus_1764#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [GTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAAGAACGTGTTCAGCAAATTATGGAAAAAGCAATGCAAGATGCAGAATGGATAGTTAATAAGTACACTAAACCAAAAGGGACAAAGTAATAAACATGCAAAGATATTATCACCATTGTAGATACATTGTGTAATTTATTCTTTAGTAAAGGAAGAATTTGTAATTATTCTATTCAAGACATGGATTTCAAAACCATAATAAATGATCAAAATGAAATTAGTGCATCGCAATTTTTGAAAGCTATTGATATATGGTGTCGTAATCCTCAAATTATAAACCGTAGAATTCTAGCATCTATTGAAATATTGAATATCGAAATTAATTATGATATTTTTAAAATTTCCAATTATATTAATACTTTGGATGTTTCAATCTTAGGTATAAATCACCAAAAAGATGATATTGATAATAGAACGTTATTGGATGCTTTGCGCATTTTTGATCAAGTGGCTATTACAACAAATATGGAAAAAATCCATTTAT]

[+] EMBL BI513020             [GTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAAGAACGTGTTCAGCAAATTATGGAAAAAGCAATGCAAGATGCAGAATGGATAGTTAATAAGTACACTAAACCAAAAGGGACAAAGTAATAAACATGCAAAGATATTATCACCATTGTAGATACATTGTGTAATTTATTCTTTAGTAAAGGAAGAATTTGTAATTATTCTATTCAAGACATGGATTTCAAAACCATAATAAATGATCAAAATGAAATTAGTGCATCGCAATTTTTGAAAGCTATTGATATATGGTGTCGTAATCCTCAAATTATAAACCGTAGAATTCTAGCATCTATTGAAATATTGAATATCGAAATTAATTATGATATTTTTAAAATTTCCAATTATATTAATACTTTGGATGTTTCAATCTTAGGTATAAATCACCAAAAAGATGATATTGATAATAGAACGTTATTGGATGCTTTGCGCATTTTTGATCAAGTGGCTATTACAACAAATATGGAAAAAATCCATTTAT]




>consensus_1764#0
GTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAAGAACGTGTTCAGCAAATT
ATGGAAAAAGCAATGCAAGATGCAGAATGGATAGTTAATAAGTACACTAAACCAAAAGGG
ACAAAGTAATAAACATGCAAAGATATTATCACCATTGTAGATACATTGTGTAATTTATTC
TTTAGTAAAGGAAGAATTTGTAATTATTCTATTCAAGACATGGATTTCAAAACCATAATA
AATGATCAAAATGAAATTAGTGCATCGCAATTTTTGAAAGCTATTGATATATGGTGTCGT
AATCCTCAAATTATAAACCGTAGAATTCTAGCATCTATTGAAATATTGAATATCGAAATT
AATTATGATATTTTTAAAATTTCCAATTATATTAATACTTTGGATGTTTCAATCTTAGGT
ATAAATCACCAAAAAGATGATATTGATAATAGAACGTTATTGGATGCTTTGCGCATTTTT
GATCAAGTGGCTATTACAACAAATATGGAAAAAATCCATTTAT

consensusID : consensus_1764#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [GGATCTTTTCATTCGACCGATAATCACGCGTTCGTTTGTTCGTTTATATAATTATGCTTTCGGTTAACGAGCGAGAAAAAGATAAATCATCATTCGTCGTATATATTGACATCGATATTCGAATAATTTTTTTTCGTCTAAATCCGTCGATTATCCATTTTGACAGAGTGTTCGAAAGATTTAAACAAGCAAGCGCATAGTAACAAGAGTGTGAAAAGTGTGGTTAAAACGCGGATGAGAAAAACATCGAGGAAAAGAAAGGAGAGCTATTTGAACATGTCTTTCATCGTTTCTACATTAAGATGGCTAGTGCAAGATTACGAGAATCTGCTTTAAAATCGCCGAGACAGTTGTATAAATTTTTATTGCGAGAATGCGAAAGATTGCCAAAGGAAGCGCAAGGATTTTACAGACATTCGGTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAGGAACGTGTTCAGCAAATTATGGAAAA]

[+] EMBL BI511907             [GGATCTTTTCATTCGACCGATAATCACGCGTTCGTTTGTTCGTTTATATAATTATGCTTTCGGTTAACGAGCGAGAAAAAGATAAATCATCATTCGTCGTATATATTGACATCGATATTCGAATAATTTTTTTTCGTCTAAATCCGTCGATTATCCATTTTGACAGAGTGTTCGAAAGATTTAAACAAGCAAGCGCATAGTAACAAGAGTGTGAAAAGTGTGGTTAAAACGCGGATGAGAAAAACATCGAGGAAAAGAAAGGAGAGCTATTTGAACATGTCTTTCATCGTTTCTACATTAAGATGGCTAGTGCAAGATTACGAGAATCTGCTTTAAAATCGCCGAGACAGTTGTATAAATTTTTATTGCGAGAATGCGAAAGATTGCCAAAGGAAGCGCAAGGATTTTACAGACATTCGGTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAGGAACGTGTTCAGCAAATTATGGAAAA]




>consensus_1764#1
GGATCTTTTCATTCGACCGATAATCACGCGTTCGTTTGTTCGTTTATATAATTATGCTTT
CGGTTAACGAGCGAGAAAAAGATAAATCATCATTCGTCGTATATATTGACATCGATATTC
GAATAATTTTTTTTCGTCTAAATCCGTCGATTATCCATTTTGACAGAGTGTTCGAAAGAT
TTAAACAAGCAAGCGCATAGTAACAAGAGTGTGAAAAGTGTGGTTAAAACGCGGATGAGA
AAAACATCGAGGAAAAGAAAGGAGAGCTATTTGAACATGTCTTTCATCGTTTCTACATTA
AGATGGCTAGTGCAAGATTACGAGAATCTGCTTTAAAATCGCCGAGACAGTTGTATAAAT
TTTTATTGCGAGAATGCGAAAGATTGCCAAAGGAAGCGCAAGGATTTTACAGACATTCGG
TTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAGGAACGTGTTCAGCAAATTA
TGGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1764#0      GTTAAACAAAATTTTAAACAACATTTAATAGAACCCGATAAAGAACGTGTTCAGCAAATT 60
consensus_1764#1      -----------------GGATCTTTTCATTCGACC-GATAATCA-CGCGTTCGTTTGTTC 41
                                         * * *** **   *** *****  * ** ****      * 

consensus_1764#0      ATGGAAAAAGCAATGCAAGATGCAGAATGGATAGTTAATAAGTACACTAAACCAAAAGGG 120
consensus_1764#1      GTTTATATAATTATGCTTT-CGGTTAACGAGCGAGAAAAAGATAAATCATCATTCGTCGT 100
                       *  * * *   ****     *   ** *       ** *  ** *  *         * 

consensus_1764#0      ACAAAGTAATA--AACATGCAAAGATATTATCACCATTGTAGATACATTGTGTAATTTAT 178
consensus_1764#1      ATATATTGACATCGATATTCGAATAATTTTTTTTCGTC-TAAATCCGTCG-ATTATCCAT 158
                      * * * * * *   * ** * ** *  ** *   * *  ** ** * * *  * **  **

consensus_1764#0      TCTTT---AGTAAAGGAAGAATTTG--TAATTATTCTATTCAAGACATGGATTTCAAAAC 233
consensus_1764#1      TTTGACAGAGTGTTCGAAAGATTTAAACAAGCAAGCGCATAGTAACAAGAGTGTGAAAAG 218
                      * *     ***    ***  ****    **  *  *   *    *** *  * * **** 

consensus_1764#0      CATAATAAATGATCAAA-ATGAAATTAGTGCATCGCAATTTTTGAAAGCTATTGATATAT 292
consensus_1764#1      TGTGGTTAAAACGCGGATGAGAAAAACATCGAGGAAAAGAAAGGAGAGCTATTTGAACAT 278
                        *  * **    *  *   ****    *  *    **     ** *******   * **

consensus_1764#0      GG-TGTCGTAATCCTCAAATTATAAACCGTAGAATTCTAGCATCTATTGAAATATTGAAT 351
consensus_1764#1      GTCTTTCATCGTTTCTACATTA--AGATGGCTAGTGCAAG-----ATTACGAGAATCTGC 331
                      *  * ** *  *    * ****  *   *   * * * **     ***   * * *    

consensus_1764#0      ATCGAAATTAATTATGATATTTTTAAAATTTCCAATTATATTAATACTTTGGATGTTTCA 411
consensus_1764#1      TTTAAAATCG-CCGAGACAGTTGTATAAATTTTTATTGCGAGAATGCGAAAGATTGCCAA 390
                       *  ****       ** * ** ** ** **   ***     *** *    ***     *

consensus_1764#0      ATCTTAGGTATAAATCACCAAAAAGATGATATTGATAATAGAACGTTATTGGATGCTTTG 471
consensus_1764#1      AGGAAGCGCAAGGATT-TTACAGACATTCGGTTAA--ACAAAATTTTAAACAACATTTAA 447
                      *      * *   **    * * * **    ** *  * * **  ***    *   **  

consensus_1764#0      CGCATTTTTGATCAAGTGGCTATTACAACAAAT-ATGGAAAAAATCCATTTAT 523
consensus_1764#1      TAGAACCC-GATAAGGAACGTGTT-CAGCAAATTATGGAAAA----------- 487
                         *     *** * *    * ** ** ***** ********

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)