cluster # 1769

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Apis mellifera
cluster # 1769 cluster # 1769 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1769#0 length = 515 sequences # 1

consensus_1769#1 length = 472 sequences # 1

consensusID : consensus_1769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTGAAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTACAGCAACGACTACAAGGACAGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAACATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCGAACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTTGCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGGATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAGTTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT]

[+] EMBL BI510572             [GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTGAAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTACAGCAACGACTACAAGGACAGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAACATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCGAACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTTGCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGGATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAGTTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT]




>consensus_1769#0
GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTG
AAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTACAGCAACGACTACAAGGACAGTAA
ACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAACATTTA
GTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCGAACTA
ATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTTGCCAA
AGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGGATATT
TATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAGTTATGG
CACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAATCATCAAT
ATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT

consensusID : consensus_1769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCACAGGATATATCTACTCACGCTCGAATAATGGCAGAAAATCCAATTTGGGATGGAGAAAAGACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCTCTTACGGCATATAAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAAATACCGATAAGGGAAATAATCCTAAAGGTTATTTACCAAGTCATTATGAAAAAGTACAAATGTTATTATCTGATCGTTTTCTTGGTTTCTTTATGGTCCCAAGTCAAGGATCTTGGAATTATAACTTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAAGAATTTTATCATGAAATTCATAGACCTGCCCAT]

[+] EMBL BI512028             [AGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCACAGGATATATCTACTCACGCTCGAATAATGGCAGAAAATCCAATTTGGGATGGAGAAAAGACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCTCTTACGGCATATAAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAAATACCGATAAGGGAAATAATCCTAAAGGTTATTTACCAAGTCATTATGAAAAAGTACAAATGTTATTATCTGATCGTTTTCTTGGTTTCTTTATGGTCCCAAGTCAAGGATCTTGGAATTATAACTTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAAGAATTTTATCATGAAATTCATAGACCTGCCCAT]




>consensus_1769#1
AGTTCATTTACCTAATACACTTCCAAATCATCAATATCTTAAGGAAATGGAGCCTCTCGG
TTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCACAGGATATATCTACTCA
CGCTCGAATAATGGCAGAAAATCCAATTTGGGATGGAGAAAAGACTATTGTTATTACTTG
CAGTTTTACGCCAGGATCTTGTTCTCTTACGGCATATAAATTAACACCTAGTGGTTTTGA
ATGGGGAAAGCAAAATACCGATAAGGGAAATAATCCTAAAGGTTATTTACCAAGTCATTA
TGAAAAAGTACAAATGTTATTATCTGATCGTTTTCTTGGTTTCTTTATGGTCCCAAGTCA
AGGATCTTGGAATTATAACTTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATT
GCAATTGGCAAATCCGAAAGAATTTTATCATGAAATTCATAGACCTGCCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1769#0      GAGATATTATCTTGGGTATGGAAATTAGTGCACCCTCTGCACAACGTCAACAAATTGCTG 60
consensus_1769#1      -------------AGTTCATTTACCTAATACACTTCC---AAATCATCAATATCTTAAGG 44
                                    * *     *  ** * ***   *   * * * **** *  **   *

consensus_1769#0      AAATAGAAAAGCAAACAAAAGAACAATCGCAGCTTA-----CAGCAACGACTACAAGGAC 115
consensus_1769#1      AAATGGAGCCTCTCGGTTGGATTCATACTCAACCTAATGAATTGCCACAATTATCGCCAC 104
                      **** **    *           **  * ** * **       ** ** * **     **

consensus_1769#0      AGTAAACAAACATGGAGACGAAATTATCACGGCGACAACTTCCAATTATGAAACACAAAC 175
consensus_1769#1      AGGATATATCTACTCACGCTCGA--ATAATGGCAGAAAATCCAATTTGGGATGGAGAAAA 162
                      ** * * *   *   *  *   *  ** * ***   ** * * * **  **   * *** 

consensus_1769#0      ATTTAGTTCGAAAACTGAATGGCGAGTAAGAGCAATTTCTGCTACCAATTTGCATCTTCG 235
consensus_1769#1      GACTATTGTTATTACTTGCAGTTTTACGCCAGGATCTTGTTCT-----CTTACGGCATAT 217
                         ** *   *  ***    *         ** *  ** * **      ** *  * *  

consensus_1769#0      AACTAATCATATATATGTATCATCCGATGATATTAAGGAAACTGGTTACACATATATTTT 295
consensus_1769#1      AAATTAACACCTAGTGGTTTTGAATGGGGAAAGCAAA-ATACCGATAAGGGAAATAATC- 275
                      ** * * **  **   ** *     *  ** *  **  * ** * * *   * *** *  

consensus_1769#0      GCCAAAGAATGTTCTCAAAAAATTCGTCACTATTTCAGATTTACGAGCGCAGATAGCGGG 355
consensus_1769#1      -CTAAAGGTTATTTACCAA------GTCATTATGA-AAAAGTACAAATGTTATTATCTGA 327
                       * ****  * **  * **      **** ***   * *  *** *  *    ** * * 

consensus_1769#0      ATATTTATATGGAATTAGCCCACCAGATAATCCACAAGTTAAAGAAATACGATGTATAG- 414
consensus_1769#1      TCGTTTTCTTGGTTT-------CTTTATGGTCC-CAAGTCAAGGATCTTGGAATTATAAC 379
                         ***   ***  *       *   **  *** ***** ** **  *  **  ****  

consensus_1769#0      -TTATGGCACCACAATGGGGTACTCATCAAACAGTTCATTTACCTAATACACTTCCAAAT 473
consensus_1769#1      TTTATGGGTGTGAGACATGATCCAAATATGAAATATGAATTGCAATTGGCAAATCCGAAA 439
                       ******       *   * * *  **   * *  * * ** *      **  *** ** 

consensus_1769#0      CATCAATATCTTAAGGAAATGGAGCCTCTCGGTTGGATTCAT 515
consensus_1769#1      GAATTTTATCATGAAATTCATAGACCTGCCCAT--------- 472
                       *    **** * *          ***  *  *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)