cluster # 179

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Apis mellifera
cluster # 179 cluster # 179 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_179#0 length = 531 sequences # 1

consensus_179#1 length = 502 sequences # 3
consensus_179#2 length = 484 sequences # 2

consensusID : consensus_179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGACAAATCACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAAGATTGTATTCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTT]

[+] EMBL BI513259             [GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGACAAATCACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAAGATTGTATTCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTT]




>consensus_179#0
GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGT
ATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGACAAATCA
CAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAAGATTGTATTCTTGTA
GCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGATCAACTTT
GATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAAT
AATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTG
GTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGAC
AGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGNNAA
AATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTT

consensusID : consensus_179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 502
fasta sequence

                              [TGTAAGAAGCACTTGTATTTTTGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACT]

[+] EMBL BI507376             [TGTAAGAAGCACTTGTATTTTTGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCC                                                                                                                                                                                                                                              ]
[+] EMBL BI512808             [                     TGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATCACTAAAACT]
[+] EMBL BI512741             [                     TGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCAAATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGAAA                                                                                ]




>consensus_179#1
TGTAAGAAGCACTTGTATTTTTGGTGGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGA
ACAAGGAGTTGAGATTTGCATTGCTACTCCTGGACGATTAATTGATTTTTTGGAACGTGG
CACAACTAATTTACGTAGATGTACATATTTGGTATTGGATGAAGCAGATAGAATGTTAGA
TATGGGTTTTGAACCACAGATTAGAAAAATTATTGAACAAATCAGACCAGATAGACAAGT
ATTAATGTGGTCTGCAACTTGGCCAAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGT
AGATTATACACAATTGAATATTGGATCATTAACATTATCAGCTAACCATAATATTCTTCA
AATTGTTGATGTTTGTGAAGAAGATGAAAAACAAACAAAATTGCAAAATCTTCTTCAGGA
AATCAGTAATGTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAA
AGTGGAGAGTATCACTAAAACT

consensusID : consensus_179#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 484
fasta sequence

                              [CAACAATCTATTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTTACAAAATTTCTAAATGTGTAACTTA]

[+] EMBL BI516729             [CAACAATCTATTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATG                                                                                                ]
[+] EMBL BI515151             [          TTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTGATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAATTCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTTACAAAATTTCTAAATGTGTAACTTA]




>consensus_179#2
CAACAATCTATTGATTTTGCTACTATCGCTACTCTGTGATGATGCTTAGGACACGACGTG
ATATGAAATTGCATTTAAGAATAGCATACATCGTGGGCGCTCTGTATGCTGTCATAATAT
TCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGATCAACTTTGATTATCCAAAT
TCATCTGAAGACTACATTCATAGAATTGGTAGAACGGGCCGTTCAAATAATTCAGGAACG
AGTTATGCATTCTTTACACCACAAAATGGTCGACAGGCTAAAAGTTTGGTTAATGTACTT
AGAGAAGCAAAACAAATTATCAATCCAAAACTAATGGAACTTGCAGACAGAAATGGAAAT
GATATCTCACGAAATCGTTGGGGTTATGGAACTTATCGTAAAAGAGAAAATGTTTTCCCT
AAAACACATAAACGATTTGAAGTGGTCTAGATTAACTTTACAAAATTTCTAAATGTGTAA
CTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_179#0      GTTAGTCCAGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGT 60
consensus_179#2      ------------------------------------------------------------
consensus_179#1      -----------------------------------TGTAAGAAGCACTTGTATTTTTGGT 25
                                                                                 

consensus_179#0      ATCACTAAAACTATCCGTCGTTATGGCTGGCCAGCTGTATGTATACATGGTGAC-AAATC 119
consensus_179#2      -------CAACAATCTATTGATTTTGCTA-CTATCGCTACTCTGTGATGATGCTTAGGAC 52
consensus_179#1      GGTGCACCAAAAGGAAGCCAAGCTCGTGATTTAGAACAAGGAGTTGAGATTTGCATTGCT 85
                             **             * *      *     *       *   *         

consensus_179#0      ACAATTAGAAAGAGATTTTGTTCTTTCAGAATTTAGGAGGAATAAA------GATTGTAT 173
consensus_179#2      ACGACGTGATATGAAATTG--CATTTAAGAA--TAGCATACATCGT------GGGCGC-T 101
consensus_179#1      ACTCCTGGACGATTAATTGA-TTTTTTGGAACGTGGCACAACTAATTTACGTAGATGTAC 144
                     **     **     * **     ***  ***  * * *    *             *   

consensus_179#0      TCTTGTAGCAACAGATGTTGCTGCTCGTGGATTGGATGTTGACGATGTAAAGTACGTGAT 233
consensus_179#2      CTGTATGCTGTCATAATATTCAACGATTAAACATGATGTTGACGATGTAAAGTACGTGAT 161
consensus_179#1      ATATTTGGTATTGGATGAAGCAGATAGAATGTTAGATATGGGTTTTGAACCACAGATTAG 204
                        * *        *     *             *** * *    ** *    *  * * 

consensus_179#0      CAACTTTGATTATCCAAATTCATCTGA-AGACTA-CATTCATAGAATTGGTAGAACGGGC 291
consensus_179#2      CAACTTTGATTATCCAAATTCATCTGA-AGACTA-CATTCATAGAATTGGTAGAACGGGC 219
consensus_179#1      AAAAATTATTGAACAAATCAGACCAGATAGACAAGTATTAATGTGGTCTGCAACTTGGCC 264
                      **  **  * * * **    * * ** **** *  *** **    *  * *    ** *

consensus_179#0      C------GTTCAAATAATT-CAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCG 344
consensus_179#2      C------GTTCAAATAATT-CAGGAACGAGTTATGCATTCTTTACACCACAAAATGGTCG 272
consensus_179#1      AAAAGAAGTTCGAAACCTTGCAGAAGAATATCTTGTAGATTATACACAATTGAATATTGG 324
                            **** **   ** *** *     *  ** *   * ***** *   ***  * *

consensus_179#0      ACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACT 404
consensus_179#2      ACAGGCTAAAAGTTTGGTTAATGTACTTAGAGAAGCAAAACAAATTATCAATCCAAAACT 332
consensus_179#1      ATCATTAACATTATCAGCTAACC--ATAATATTCTTCAAATTGTTGATGTTTGTGAAGAA 382
                     *      * *   *  * ***     * * *      ***    * **   *   **   

consensus_179#0      AATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAAC 464
consensus_179#2      AATGGAACTTGCAGACAGAAATGGAAATGATATCTCACGAAATCGTTGGGGTTATGGAAC 392
consensus_179#1      GATGAAA--AACAAACAAAATTGCAAAATCTTCTTCAGGAAATCAGTAATGTTA--GTCC 438
                      *** **    ** *** ** ** ***   *   *** ******  *   ****  *  *

consensus_179#0      TTATCGTAAAAGNNAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGAT 524
consensus_179#2      TTATCGTAAAAGAGAAAATGTTTTCCCTAAAACACATAAACGATTTGAAGTGGTCTAGAT 452
consensus_179#1      AGATGGTGGAAAGACAATAATTTTTGTAGAAACAAAAAAAAAAGTGGAGAGTATC---AC 495
                       ** **  **    **   ****     ***** * ***  * * **     **   * 

consensus_179#0      TAACTTT------------------------- 531
consensus_179#2      TAACTTTACAAAATTTCTAAATGTGTAACTTA 484
consensus_179#1      TAAAACT------------------------- 502
                     ***   *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)