cluster # 1803

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Apis mellifera
cluster # 1803 cluster # 1803 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1803#0 length = 512 sequences # 1

consensus_1803#1 length = 425 sequences # 1

consensusID : consensus_1803#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [AGATAGAATATGCTTTAGCTGCTGTCGCTGCTGGAGCAGCAAGTGTTGGCATTAAAGCTTCAAATGGAGTTGTTCTTTCCACGGAAAATAAACACAAATCTATATTGTACGATGAACATAGTGTAAAGAAAGTAGAAATAATTACAAAACACATTGGTATGGTATATAGTGGTATGGGTCCAGATTATAGATTATTAGTGAAGCAAGCACGTAAAATTGCACAACAATATCAGCTTATTTATCAAGAACCAATACCTACTGCACAATTGGTACAAAGAGTTGCAATGCTTATGCAAGAATATACACAATCTGGAGGAGTCAGGCCTTTTGGAGTCTCTTTGTTAATTTGTGGCTGGGATAATGGAAAGCCATGTTTATATCAATGTGATCCTTCCGGTGCATATTTTGCATGGAAGGCTACAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAGATTTGGAATTGGACGATGCTGTTCATACTGCC]

[+] EMBL BI515163             [AGATAGAATATGCTTTAGCTGCTGTCGCTGCTGGAGCAGCAAGTGTTGGCATTAAAGCTTCAAATGGAGTTGTTCTTTCCACGGAAAATAAACACAAATCTATATTGTACGATGAACATAGTGTAAAGAAAGTAGAAATAATTACAAAACACATTGGTATGGTATATAGTGGTATGGGTCCAGATTATAGATTATTAGTGAAGCAAGCACGTAAAATTGCACAACAATATCAGCTTATTTATCAAGAACCAATACCTACTGCACAATTGGTACAAAGAGTTGCAATGCTTATGCAAGAATATACACAATCTGGAGGAGTCAGGCCTTTTGGAGTCTCTTTGTTAATTTGTGGCTGGGATAATGGAAAGCCATGTTTATATCAATGTGATCCTTCCGGTGCATATTTTGCATGGAAGGCTACAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAGATTTGGAATTGGACGATGCTGTTCATACTGCC]




>consensus_1803#0
AGATAGAATATGCTTTAGCTGCTGTCGCTGCTGGAGCAGCAAGTGTTGGCATTAAAGCTT
CAAATGGAGTTGTTCTTTCCACGGAAAATAAACACAAATCTATATTGTACGATGAACATA
GTGTAAAGAAAGTAGAAATAATTACAAAACACATTGGTATGGTATATAGTGGTATGGGTC
CAGATTATAGATTATTAGTGAAGCAAGCACGTAAAATTGCACAACAATATCAGCTTATTT
ATCAAGAACCAATACCTACTGCACAATTGGTACAAAGAGTTGCAATGCTTATGCAAGAAT
ATACACAATCTGGAGGAGTCAGGCCTTTTGGAGTCTCTTTGTTAATTTGTGGCTGGGATA
ATGGAAAGCCATGTTTATATCAATGTGATCCTTCCGGTGCATATTTTGCATGGAAGGCTA
CAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAG
ATTTGGAATTGGACGATGCTGTTCATACTGCC

consensusID : consensus_1803#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [GGAAGGCTACAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAGATTTGGAATTGGACGATGCTGTTCATACTGCCATTTTAACTTTAAAGGAAGGATTTGAAGGACAGATGACAGCTGATAATATAGAAATTGGTATTTGTGATGCAAACGGTTTTAGAAGATTGGAACCTTCCAATGTAAAAGATTATCTTGCTAATATTCCTTAAATTTTTATTATTTTTATATTACATTATTACAGTAATCTTTACACAATCAAGAATAAATTAGATTCTTATAATAAAATGTTTTGTTGAAAGTAACATTATTATTCCTTTACTTGTAATATATAATAAGAAAATTTATCTTTAAAATACGAATTTTATCTTTATTCAGATTTCGTTTATAAAAATTTATTCAGA]

[-] EMBL BI511886             [GGAAGGCTACAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAGATTTGGAATTGGACGATGCTGTTCATACTGCCATTTTAACTTTAAAGGAAGGATTTGAAGGACAGATGACAGCTGATAATATAGAAATTGGTATTTGTGATGCAAACGGTTTTAGAAGATTGGAACCTTCCAATGTAAAAGATTATCTTGCTAATATTCCTTAAATTTTTATTATTTTTATATTACATTATTACAGTAATCTTTACACAATCAAGAATAAATTAGATTCTTATAATAAAATGTTTTGTTGAAAGTAACATTATTATTCCTTTACTTGTAATATATAATAAGAAAATTTATCTTTAAAATACGAATTTTATCTTTATTCAGATTTCGTTTATAAAAATTTATTCAGA]




>consensus_1803#1
GGAAGGCTACAGCAATGGGTAAAAATTTTGTCAATGGAAAAGTATTTCTGGAGAAAAGAT
ATAGTGAAGATTTGGAATTGGACGATGCTGTTCATACTGCCATTTTAACTTTAAAGGAAG
GATTTGAAGGACAGATGACAGCTGATAATATAGAAATTGGTATTTGTGATGCAAACGGTT
TTAGAAGATTGGAACCTTCCAATGTAAAAGATTATCTTGCTAATATTCCTTAAATTTTTA
TTATTTTTATATTACATTATTACAGTAATCTTTACACAATCAAGAATAAATTAGATTCTT
ATAATAAAATGTTTTGTTGAAAGTAACATTATTATTCCTTTACTTGTAATATATAATAAG
AAAATTTATCTTTAAAATACGAATTTTATCTTTATTCAGATTTCGTTTATAAAAATTTAT
TCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1803#0      AGATAGAATATGCTTTAGCTGCTGTCGCTGCTGGAGCAGCAAGTGTTGGCATTAAAGCTT 60
consensus_1803#1      ------------------------------------------------------------
                                                                                  

consensus_1803#0      CAAATGGAGTTGTTCTTTCCACGGAAAATAAACACAAATCTATATTGTACGATGAACATA 120
consensus_1803#1      ---------------------------------GGAAGGCTACAGCAATGGGTAAAAATT 27
                                                         **  *** *      * * ** ** 

consensus_1803#0      GTGTAAAGAAAGTAGAAATAATT-ACAAAACACATTGGTATGGTATATAGTGGTATGGGT 179
consensus_1803#1      TTGTCAATGGAAAAGTATTTCTGGAGAAAAGATATAGTGAAGATTTGGAATTGGACGA-T 86
                       *** **   *  ** * *  *  * **** * ** *  * * * *  * * * * *  *

consensus_1803#0      CCAGATTATAGATTATTAGTGAAGCAAGCACGTAAAATTGCACAACA-ATATCAGCTTAT 238
consensus_1803#1      GCTGTTCATACTGCCATTTTAACTTTAAAGGAAGGATTTGAAGGACAGATGACAGCTGAT 146
                       * * * ***      *  * *    *        * *** *  *** **  ***** **

consensus_1803#0      TTATCAAGAACCAATACCTACTGCACAATTGGTACAAAGAG-TTGCAATGCTT--ATGCA 295
consensus_1803#1      AATATAGAAATTGGTATTTGTGATGCAAACGGTTTTAGAAGATTGGAACCTTCCAATGTA 206
                           *  **    **  *      ***  ***   *  ** *** **   *   *** *

consensus_1803#0      AGAATATACACAATCTGGAGGAGTCAGGCCTTTTGGAGTCTCTTTGTTAATTTGTGGCTG 355
consensus_1803#1      AAAGATTATCTTGCTAATATTCCTTAAAT-TTTTATTATTTTTATATTACATTATTACAG 265
                      * *   **          *    * *    ****    * * * * ***  ** *  * *

consensus_1803#0      GGATAATGGAA-AGCCATGTTTATATCAATGTGATCCTTCCGGTGCATATTTTGCATGGA 414
consensus_1803#1      TAATCTTTACACAATCAAGAATAAATTA----GATTCTTATAATA-AAATGTTTTGTTGA 320
                        **  *   * *  ** *  ** ** *    *** ***    *  * ** **   * **

consensus_1803#0      AGGCTACAGCAATGGGTAAAAATTT----TGT-CAATGGAAAAGT--ATTTCTGGAGAAA 467
consensus_1803#1      AAGTAACATTATTATTCCTTTACTTGTAATATATAATAAGAAAATTTATCTTTAAAATAC 380
                      * *  ***  * *        * **    * *  ***   *** *  ** * *  *  * 

consensus_1803#0      AGATATAGTGAAGATTTGGAATTGGACGATGCTG-TTCATACTGCC 512
consensus_1803#1      GAATTTTATCTTTATTCAGATTTCGTTTATAAAAATTTATTCAGA- 425
                        ** *  *    ***  ** ** *   **     ** ** * *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)