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Apis mellifera
cluster # 1868 cluster # 1868       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1868#0 length = 488 sequences # 1  
 consensus_1868#1 length = 345 sequences # 1  
consensusID : consensus_1868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence 
                              [CTCAATGTCAATCATTGGATTCTTTTTAAATAATAATATATGATCGACATTGATTCGTATTTTTAATTCCGTTTAGACTGAGGATTTTTTTTTTTTTTTTTTTTTTATACACAGGAATCATTTGTTGCTCGAGTCGTTTCAACCGAAGATCGTTTGTGGCTGCATCTCGCTTCCGGGTCCTCCACACGGCGAGAACCGACCCGACAGTCTTTGGGTTTCATTGATGAGAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAAGGAAAAGGAAAAGAAAAGAAGGGGGGAAGAACTGTCGAGAAAATCGAGATCGCCACGGTGTATCGATGTTCGAATTCCTTTCTCTTTTCGTGTGCGTAATTTAATAACGGTTGGACGGAAATTGGACGAAATTCACGGGATGATAAAGAGGATAATAATAATAATAATAATAAAAA]

[+] EMBL BI509012             [CTCAATGTCAATCATTGGATTCTTTTTAAATAATAATATATGATCGACATTGATTCGTATTTTTAATTCCGTTTAGACTGAGGATTTTTTTTTTTTTTTTTTTTTTATACACAGGAATCATTTGTTGCTCGAGTCGTTTCAACCGAAGATCGTTTGTGGCTGCATCTCGCTTCCGGGTCCTCCACACGGCGAGAACCGACCCGACAGTCTTTGGGTTTCATTGATGAGAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAAGGAAAAGGAAAAGAAAAGAAGGGGGGAAGAACTGTCGAGAAAATCGAGATCGCCACGGTGTATCGATGTTCGAATTCCTTTCTCTTTTCGTGTGCGTAATTTAATAACGGTTGGACGGAAATTGGACGAAATTCACGGGATGATAAAGAGGATAATAATAATAATAATAATAAAAA]




>consensus_1868#0
CTCAATGTCAATCATTGGATTCTTTTTAAATAATAATATATGATCGACATTGATTCGTAT
TTTTAATTCCGTTTAGACTGAGGATTTTTTTTTTTTTTTTTTTTTTATACACAGGAATCA
TTTGTTGCTCGAGTCGTTTCAACCGAAGATCGTTTGTGGCTGCATCTCGCTTCCGGGTCC
TCCACACGGCGAGAACCGACCCGACAGTCTTTGGGTTTCATTGATGAGAACCGCGATGAA
CCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAATGTACGAAAGAATGGAGAGGA
AAAAAAAAAAAAGGAAAAGGAAAAGAAAAGAAGGGGGGAAGAACTGTCGAGAAAATCGAG
ATCGCCACGGTGTATCGATGTTCGAATTCCTTTCTCTTTTCGTGTGCGTAATTTAATAAC
GGTTGGACGGAAATTGGACGAAATTCACGGGATGATAAAGAGGATAATAATAATAATAAT
AATAAAAA

consensusID : consensus_1868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence 
                              [CTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCGATAATTTTTTTTTTTTTTTAATAATTTTTTCACATAAAAAGTTCTTGGGTTCGATACATTTTTCTGTTCGTTTAACGCTCCCTCGTCGTCAGTGAGCCGAAAACGTGTTTCTTTCTAGTCGTTTCAACCGAAAATTGTTTGGGGCTGCATCTCGCTTCCGGGTCCTCCACACGGNNAGAACCGACCCGACAGTCTTTGGGTTTCATTGATGAAAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAGGGAAAAGGAAAA]

[+] EMBL BI514719             [CTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCGATAATTTTTTTTTTTTTTTAATAATTTTTTCACATAAAAAGTTCTTGGGTTCGATACATTTTTCTGTTCGTTTAACGCTCCCTCGTCGTCAGTGAGCCGAAAACGTGTTTCTTTCTAGTCGTTTCAACCGAAAATTGTTTGGGGCTGCATCTCGCTTCCGGGTCCTCCACACGGNNAGAACCGACCCGACAGTCTTTGGGTTTCATTGATGAAAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAGGGAAAAGGAAAA]




>consensus_1868#1
CTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCGATAATTTTTTTTTTTTTTTAATAA
TTTTTTCACATAAAAAGTTCTTGGGTTCGATACATTTTTCTGTTCGTTTAACGCTCCCTC
GTCGTCAGTGAGCCGAAAACGTGTTTCTTTCTAGTCGTTTCAACCGAAAATTGTTTGGGG
CTGCATCTCGCTTCCGGGTCCTCCACACGGNNAGAACCGACCCGACAGTCTTTGGGTTTC
ATTGATGAAAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGAGAAAA
TGTACGAAAGAATGGAGAGGAAAAAAAAAAAAGGGAAAAGGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1868#0      --------------------------CTCAATGTCAATCATTGGATTCTTTTTAAATAAT 34
consensus_1868#1      CTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCGATAATT--TTTTTTTTTTTTTAAT 58
                                                 *   * ** ** ***   ** *****   ****

consensus_1868#0      AATATATGATCGACATTGATTCGTATTTTTAATTCCGTTTAGACTGAGGATTTTTTTTTT 94
consensus_1868#1      AATTTTTTCACATAAAAAGTTCTTGGGTTCGATACATTTTTCTGTTCG---TTTAACGCT 115
                      *** * *   *   *    *** *   **  ** *  ***    *  *   ***     *

consensus_1868#0      TTTTTTTTTTTTATACACAGGAATCATTTGTTGCTCGAGTCGTTTCAACCGAAGATCGTT 154
consensus_1868#1      CCCTCGTCGTCAGTGAGCCGAAAACGTGTTTCTTTCTAGTCGTTTCAACCGAAAATTGTT 175
                         *  *  *   *   * * ** * * * *   ** **************** ** ***

consensus_1868#0      TGTGGCTGCATCTCGCTTCCGGGTCCTCCACACGGCGAGAACCGACCCGACAGTCTTTGG 214
consensus_1868#1      TGGGGCTGCATCTCGCTTCCGGGTCCTCCACACGGNNAGAACCGACCCGACAGTCTTTGG 235
                      ** ********************************  ***********************

consensus_1868#0      GTTTCATTGATGAGAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGA 274
consensus_1868#1      GTTTCATTGATGAAAACCGCGATGAACCGTGCAGCTTTCATAGAGAGAGAATGAGCGGGA 295
                      ************* **********************************************

consensus_1868#0      GAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAAGGAAAAGGAAAAGAAAAGAAGG 334
consensus_1868#1      GAAAATGTACGAAAGAATGGAGAGGAAAAAAAAAAAAGGGAAAAGGAAAA---------- 345
                      ************************************* ************          

consensus_1868#0      GGGGAAGAACTGTCGAGAAAATCGAGATCGCCACGGTGTATCGATGTTCGAATTCCTTTC 394
consensus_1868#1      ------------------------------------------------------------
                                                                                  

consensus_1868#0      TCTTTTCGTGTGCGTAATTTAATAACGGTTGGACGGAAATTGGACGAAATTCACGGGATG 454
consensus_1868#1      ------------------------------------------------------------
                                                                                  

consensus_1868#0      ATAAAGAGGATAATAATAATAATAATAATAAAAA 488
consensus_1868#1      ----------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)