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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG]
[+] EMBL BI510559 [ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAACTTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTATTAGGTTTTGCCAATAGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGATATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTTTCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTAACGTGATAGGACATGCAGTAAATTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGTACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAATGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGGATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATTGGATAAAGATCTTTTATG]
consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence
[TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA]
[+] EMBL BI504736 [TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAATATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGAAAATGTTTTGAAAGAAATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAATATTTTGAAGATGTTGCTATGATTGGTATAAATCGACCTGAAACAAAAAATGCTTTAAATGTTGCAACTGCACAAGAACTGGCAGATGAAATAGATAAATTTGAAAATGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAGGAGGAAATTTTTGTAGTGGTTATGATCTTAAAGAAATTGCACAATATAATGGAAAAAATGAAGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAATTGAGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1889#0 ATAATGGAAAAAATGAAGAAGTTTTACCTCAATTTGGAGCATTGGCTAATAAAATTGAAT 60
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 TGAGTAAAAAACCTTTAATAGCTGCTATAAACGGATATGCTCTAGGAGTAGGATTTGAAC 120
consensus_1889#1 ----------------------TTTTTTATACAAATGCATTCTATAAAGCAAATATCGAA 38
* * ** ** ** **** * ** * *
consensus_1889#0 TTGCATTAATGTGCGATCTTAGAGTAATGGAAGAAAGTGCATTAT-TAGGTTTTGCCAAT 179
consensus_1889#1 TATAATCAATTTATATTATAAAAGTTATTTACGAAGATGTTTAACCTCTAAATCATCTGA 98
* ** *** * * * * *** ** * *** ** * * * * *
consensus_1889#0 AGACGATTTGGGATACCCATATTATGTGGTGGTACGGTTCGATTACCTGCTCTAATTGGA 239
consensus_1889#1 AAATGTTTTGAAAGA-----AATTGATAGAGAACAAAAGGAAAAAAATATAGTAGTGGAA 153
* * * **** * * * * * * * * * * ** * * *
consensus_1889#0 TATTCAAGAGCAATGGATTTGATTTTAACTGGTCGTCATATTGATGCAAAAGAAGCATTT 299
consensus_1889#1 TATTTTGAAGATGTTGCTATGATTGGTATAAATCGAC---CTGAAACAAAAAATGC---T 207
**** ** * * * ***** * *** * *** ***** * ** *
consensus_1889#0 TCATGTGGTTTAATTAATCGTTATACAGCCGTTGGTA-ACGTGATAGGACATGCAGTAAA 358
consensus_1889#1 TTAAATGTTGCAACTG-------CACAAGAACTGGCAGATGAAATAGATAAATTTGAAAA 260
* * ** * ** * *** *** * * * **** * * ***
consensus_1889#0 TTTTGCAAGATCTTTTGTGAAGTTTCCCAAAAAAACACTGCTTGCCGATCGAGCTTCTGT 418
consensus_1889#1 TGATGAAAACTGTTTAATCGGTGTACTTCATGGAATAG--------GAGGAAATTTTTGT 312
* ** ** * *** * * * * ** * ** * ** ***
consensus_1889#0 ACATTATGCTACATTTTCTGCTAAACAATTAGAAGAAGCTATGCAATTTGAGAAAGACAA 478
consensus_1889#1 A----GTGGT-TATGATCT--TAAAGAAATTGCA----CAATATAA--TGGAAAAAATGA 359
* ** * ** *** **** ** * * * * ** ** ** *** * *
consensus_1889#0 TGCATCTCATTTATTATTTGAAGAAGGAGTTGAAGGTGNNNAAAGGTTTGTTACAGAGGG 538
consensus_1889#1 AGAAGTTTTACCNNAATTTGGAGCATTGGCTAATAAAATTGAA---TTGAGTAAA----- 411
* * * ***** ** * * * * ** ** ** *
consensus_1889#0 ATTAGGAAAACATGGAAAATTTTATAATATTACGAAAATAAATTTGAAATTTAAGGAATT 598
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GGATAAAGATCTTTTATG 616
consensus_1889#1 ------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |