cluster # 1943

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Apis mellifera
cluster # 1943 cluster # 1943 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1943#0 length = 511 sequences # 1

consensus_1943#1 length = 415 sequences # 1

consensusID : consensus_1943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CATGCACAACTCGAACATATCGAAGATACTCGTAGCTCGATGGAAAGCGATGTCGAATTCCGAGAAACAGCCGTACTACGAGGAGCAATCACGGCTGTCGAAGCTGCACATGGAGAAGCATCCCGACTACAGGTACAGGCCGCGGCCGAAACGCACCTGCATCGTGGACGGGAAGAAGATGCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTGGTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCACGCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGCGACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTATCCCCAGGACAGCCTTTCGCCGACGGATATGATGAACTTCTCGCCAGAGAACTCGGGATCGATCGGCGGTTACGACGCGAGCCCCCGCCACCAC]

[+] EMBL BI504567             [CATGCACAACTCGAACATATCGAAGATACTCGTAGCTCGATGGAAAGCGATGTCGAATTCCGAGAAACAGCCGTACTACGAGGAGCAATCACGGCTGTCGAAGCTGCACATGGAGAAGCATCCCGACTACAGGTACAGGCCGCGGCCGAAACGCACCTGCATCGTGGACGGGAAGAAGATGCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTGGTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCACGCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGCGACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTATCCCCAGGACAGCCTTTCGCCGACGGATATGATGAACTTCTCGCCAGAGAACTCGGGATCGATCGGCGGTTACGACGCGAGCCCCCGCCACCAC]




>consensus_1943#0
CATGCACAACTCGAACATATCGAAGATACTCGTAGCTCGATGGAAAGCGATGTCGAATTC
CGAGAAACAGCCGTACTACGAGGAGCAATCACGGCTGTCGAAGCTGCACATGGAGAAGCA
TCCCGACTACAGGTACAGGCCGCGGCCGAAACGCACCTGCATCGTGGACGGGAAGAAGAT
GCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTG
GTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCAC
GCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGC
GACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTATCC
CCAGGACAGCCTTTCGCCGACGGATATGATGAACTTCTCGCCAGAGAACTCGGGATCGAT
CGGCGGTTACGACGCGAGCCCCCGCCACCAC

consensusID : consensus_1943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [TATGTCGCGCGAGGAGGCCGGAACAGGGGATGAAAGAAAGATGTGAAATCTCATATTCCGTCACACGCGATTTGCACCCGCTCGAGTCACAGGGATAGTGTGGCCACTTCGTTTCTTCGCGTCTCTGCATCGTGGACGGGAAGAAGATGCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTGGTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCACGCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGCGACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTACCCCCAGGACAGCCTTTCGCCGACGGATAT]

[+] EMBL BI515699             [TATGTCGCGCGAGGAGGCCGGAACAGGGGATGAAAGAAAGATGTGAAATCTCATATTCCGTCACACGCGATTTGCACCCGCTCGAGTCACAGGGATAGTGTGGCCACTTCGTTTCTTCGCGTCTCTGCATCGTGGACGGGAAGAAGATGCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTGGTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCACGCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGCGACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTACCCCCAGGACAGCCTTTCGCCGACGGATAT]




>consensus_1943#1
TATGTCGCGCGAGGAGGCCGGAACAGGGGATGAAAGAAAGATGTGAAATCTCATATTCCG
TCACACGCGATTTGCACCCGCTCGAGTCACAGGGATAGTGTGGCCACTTCGTTTCTTCGC
GTCTCTGCATCGTGGACGGGAAGAAGATGCGCATATCCGAGTACAAGTCGTTGATGCGGC
AACGGAGGCAGGAGATGAGGCAACTGTGGTGCCGTGACAGCGGGCCAGAGATGAGCTTCC
TGTCCCCGGTCGGCTCTGAACTGGGCACGCAACACCATCCGGGGACCGGTGCCGGGCCGT
CGGCGAGGCCTAGCGTGTCCCCTCCGGCGACCATGTTGAACGGAGGCGCGGCCGGCCCCA
GTTCCGACCATCCGTCCTTCTATTACCCCCAGGACAGCCTTTCGCCGACGGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1943#0      CATGCACAACTCGAACATATCGAAGATACTCGTAGCTCGATGGAAAGCGATGTCGAATTC 60
consensus_1943#1      ----------------------------TATGTCGCGCGAGGAGGCCGGAACAGGGGATG 32
                                                     ** ** *** *      **    *   * 

consensus_1943#0      CGAGAAACAGCCGTACTACGAGGAGCAATCACGGCTGTCGAAGCTGCACATGGAGAAGCA 120
consensus_1943#1      AAAGAAAGATGTGAAATCTCATATTCCGTCACACGCG----ATTTGCACCCGCTCGAGTC 88
                        ***** *   * * *   *    *  ****    *    *  *****  *    **  

consensus_1943#0      TCCCGACTACAGGTACAGGCCGCGGCCGAAACGCACCTGCATCGTGGACGGGAAGAAGAT 180
consensus_1943#1      ACAGGGATAGTGTGGCCACTTCGTTTCTTCGCGTCTCTGCATCGTGGACGGGAAGAAGAT 148
                       *  *  **  *   *          *    **   ************************

consensus_1943#0      GCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTG 240
consensus_1943#1      GCGCATATCCGAGTACAAGTCGTTGATGCGGCAACGGAGGCAGGAGATGAGGCAACTGTG 208
                      ************************************************************

consensus_1943#0      GTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCAC 300
consensus_1943#1      GTGCCGTGACAGCGGGCCAGAGATGAGCTTCCTGTCCCCGGTCGGCTCTGAACTGGGCAC 268
                      ************************************************************

consensus_1943#0      GCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGC 360
consensus_1943#1      GCAACACCATCCGGGGACCGGTGCCGGGCCGTCGGCGAGGCCTAGCGTGTCCCCTCCGGC 328
                      ************************************************************

consensus_1943#0      GACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTATCC 420
consensus_1943#1      GACCATGTTGAACGGAGGCGCGGCCGGCCCCAGTTCCGACCATCCGTCCTTCTATTACCC 388
                      ********************************************************* **

consensus_1943#0      CCAGGACAGCCTTTCGCCGACGGATATGATGAACTTCTCGCCAGAGAACTCGGGATCGAT 480
consensus_1943#1      CCAGGACAGCCTTTCGCCGACGGATAT--------------------------------- 415
                      ***************************                                 

consensus_1943#0      CGGCGGTTACGACGCGAGCCCCCGCCACCAC 511
consensus_1943#1      -------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)