cluster # 1948

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1948 cluster # 1948 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1948#0 length = 397 sequences # 1

consensus_1948#1 length = 390 sequences # 1

consensusID : consensus_1948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GAGAAAAAAAGTTGCTGGTTTTATGCGACAATTATCTATTAGCAACTTGGCAGGAGCTGTAGAAAATATAAGTCAAGGAGAACAAACTTTGCGTAGTCCAAGATCATTAACACAAGATTTTACAAGCGGTTGTTTTATTACACGATATCTTGATGGTTTGGAAACTAAGCAAGAAGGACCAGCAATTTTGCATGGTAGAAATCCAGAAGAATTACCAATTAAACAACTTGGAAATTTTCAGGAAGATAAAGATATAGTAGCTGCTCATACTGGCCCAGATAATGGACTTACAACTGTTAATATACAACAAAGACATTTAAGTATTAATGATATTGATATTGATTACATTGATATGTTAGATCAAGGAGAACAATATAGAAATACATCAACAACAACG]

[+] EMBL BI517236             [GAGAAAAAAAGTTGCTGGTTTTATGCGACAATTATCTATTAGCAACTTGGCAGGAGCTGTAGAAAATATAAGTCAAGGAGAACAAACTTTGCGTAGTCCAAGATCATTAACACAAGATTTTACAAGCGGTTGTTTTATTACACGATATCTTGATGGTTTGGAAACTAAGCAAGAAGGACCAGCAATTTTGCATGGTAGAAATCCAGAAGAATTACCAATTAAACAACTTGGAAATTTTCAGGAAGATAAAGATATAGTAGCTGCTCATACTGGCCCAGATAATGGACTTACAACTGTTAATATACAACAAAGACATTTAAGTATTAATGATATTGATATTGATTACATTGATATGTTAGATCAAGGAGAACAATATAGAAATACATCAACAACAACG]




>consensus_1948#0
GAGAAAAAAAGTTGCTGGTTTTATGCGACAATTATCTATTAGCAACTTGGCAGGAGCTGT
AGAAAATATAAGTCAAGGAGAACAAACTTTGCGTAGTCCAAGATCATTAACACAAGATTT
TACAAGCGGTTGTTTTATTACACGATATCTTGATGGTTTGGAAACTAAGCAAGAAGGACC
AGCAATTTTGCATGGTAGAAATCCAGAAGAATTACCAATTAAACAACTTGGAAATTTTCA
GGAAGATAAAGATATAGTAGCTGCTCATACTGGCCCAGATAATGGACTTACAACTGTTAA
TATACAACAAAGACATTTAAGTATTAATGATATTGATATTGATTACATTGATATGTTAGA
TCAAGGAGAACAATATAGAAATACATCAACAACAACG

consensusID : consensus_1948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [TTGCTTTTTTTTTTTTTTTAATGAAAAAATTTATTTCATGAAGAATATTTATAGATAAAACTTAAAACATTTCTTAATATAGAAATCTTGTTATTCTTGTAAACATAATGAAGTAAAAACTTTATTCATAAAGGAATTCGGTTATTGACACACTATCAATATGGCGGTAAAGTGGAAAACGATGTGCTTTTCAGTTTAAACAAGGATGTGCTTTTAAAAATAAAATCATGATTTAAATATACTGATATATATCAGTTGTCTTATAAAGTCATGTTAAATGATATTTGGTATTAATCATTTCACTTGCATTTAAATTTAATTTTTAATTAAAAGAATGCCAAGTTTGAGAAAAAAAGTTGCTGGTTTTATGCGACAATTATCTATTAGCAA]

[+] EMBL BI509399             [TTGCTTTTTTTTTTTTTTTAATGAAAAAATTTATTTCATGAAGAATATTTATAGATAAAACTTAAAACATTTCTTAATATAGAAATCTTGTTATTCTTGTAAACATAATGAAGTAAAAACTTTATTCATAAAGGAATTCGGTTATTGACACACTATCAATATGGCGGTAAAGTGGAAAACGATGTGCTTTTCAGTTTAAACAAGGATGTGCTTTTAAAAATAAAATCATGATTTAAATATACTGATATATATCAGTTGTCTTATAAAGTCATGTTAAATGATATTTGGTATTAATCATTTCACTTGCATTTAAATTTAATTTTTAATTAAAAGAATGCCAAGTTTGAGAAAAAAAGTTGCTGGTTTTATGCGACAATTATCTATTAGCAA]




>consensus_1948#1
TTGCTTTTTTTTTTTTTTTAATGAAAAAATTTATTTCATGAAGAATATTTATAGATAAAA
CTTAAAACATTTCTTAATATAGAAATCTTGTTATTCTTGTAAACATAATGAAGTAAAAAC
TTTATTCATAAAGGAATTCGGTTATTGACACACTATCAATATGGCGGTAAAGTGGAAAAC
GATGTGCTTTTCAGTTTAAACAAGGATGTGCTTTTAAAAATAAAATCATGATTTAAATAT
ACTGATATATATCAGTTGTCTTATAAAGTCATGTTAAATGATATTTGGTATTAATCATTT
CACTTGCATTTAAATTTAATTTTTAATTAAAAGAATGCCAAGTTTGAGAAAAAAAGTTGC
TGGTTTTATGCGACAATTATCTATTAGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1948#0      GAGAAAAAAAGTTGCTGGTTTTATGCGACAATTA--TCTATTAGCAAC-TTGGCAGGAGC 57
consensus_1948#1      --TTGCTTTTTTTTTTTTTTTAATGAAAAAATTTATTTCATGAAGAATATTTATAGATAA 58
                                 **  *  *** ***  * ****   *  ** *  **  **   **    

consensus_1948#0      TGTAGAAAATATAAGTCAAGGAGAACAAACTTTGCGTAGTCCAAG-ATCATTAACACAAG 116
consensus_1948#1      AACTTAAAACATTTCTTAATATAGAAATCTTGTTATTCTTGTAAACATAATGAAGTAAAA 118
                           **** **   * **     * *   * *   *  *  **  ** ** **   ** 

consensus_1948#0      ATTTTA--CAAGCGGTTGTTTTATTACACGATATCTTGATGGTTTGGAAACTAAGCAAGA 174
consensus_1948#1      ACTTTATTCATAAAGGAATTCGGTTAT-TGACACACTATCAATATGGCGGTAAAGT--GG 175
                      * ****  **    *   **   ***   ** *   *     * ***     ***   * 

consensus_1948#0      AGGACCAGCAATTTTGCATGGTAGAAATCCAGAAGAATTACCAATTAAACAACTTGGAAA 234
consensus_1948#1      AAAACGATGTGCTTTTCA--GTTTAAACAAGGATGTGCTTTTAA--AAATAAAATCATGA 231
                      *  ** *     *** **  **  ***    ** *   *   **  *** **  *    *

consensus_1948#0      TTTTCAGGAAGATAAAGATATAGTAGCTG-CTCATACTGGCCCAGATAATGG-ACTTACA 292
consensus_1948#1      TTT--AAATATACTGATATATATCAGTTGTCTTATAAAGTCATGTTAAATGATATTTGGT 289
                      ***  *   * *   * *****  ** ** ** ***  * *      ****  * **   

consensus_1948#0      ACTGTTAATATA--CAACAAAGACATTTAAGTATTAATGATATTGATATTGATTACATTG 350
consensus_1948#1      ATTAATCATTTCACTTGCATTTAAATTTAATTTTTAATTAAAAGAATGCCAAGT---TTG 346
                      * *  * ** *      **   * ****** * ***** * *   **    * *   ***

consensus_1948#0      ATATGTTAGATCAAGGAGAACAATATAGAAATACATCAACAACAACG 397
consensus_1948#1      AGAAAAAAAGTTGCTG-GTTTTATGCGACAATTATCTATTAGCAA-- 390
                      * *    *  *    * *    **     ***     *  * ***

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)