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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 860 fasta sequence
[GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC]
[+] EMBL BI505291 [GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCNNNCTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAA ]
[+] EMBL BI505609 [ GCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAAAG ]
[+] EMBL BI505074 [ TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGAGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC]
[+] EMBL BI516851 [ TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCC ]
consensusID : consensus_197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA]
[+] EMBL BI509300 [GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA]
consensusID : consensus_197#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC]
[+] EMBL BI505559 [TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_197#0 GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGAT 60
consensus_197#1 --------------------------------------------GAGGGACAGTTTCGAT 16
consensus_197#2 ------------------------------------------------------------
consensus_197#0 CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 120
consensus_197#1 CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 76
consensus_197#2 ---------------------TTTATCGGGTC-GCCAGGATGCAGCGCGAACGCAATCAC 38
** * ** * ** * * * **
consensus_197#0 TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 178
consensus_197#1 TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 134
consensus_197#2 TGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAAT--TTCCTATTGCCTC 96
** * *** ** ** * ** *** * ** ** ** ***** *
consensus_197#0 CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 237
consensus_197#1 CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 193
consensus_197#2 CAGGCGA-GCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTA-ATCCCGTGC---- 150
* * ** ** * * * * * * * *** * * **** *
consensus_197#0 ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGG 297
consensus_197#1 ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATG- 252
consensus_197#2 ----CCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAAT-GATGATCGTGCG- 204
* ** ** * * * * ** * ** ** **** *
consensus_197#0 TAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCA 357
consensus_197#1 ------------------------------------------------------------
consensus_197#2 ------------------------------------------------------------
consensus_197#0 CTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGAT 417
consensus_197#1 ------------------------------------------------------------
consensus_197#2 ------------------------------------------------------------
consensus_197#0 CGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 477
consensus_197#1 -------------TGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 299
consensus_197#2 ------CCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 258
***********************************************
consensus_197#0 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 537
consensus_197#1 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 359
consensus_197#2 GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 318
************************************************************
consensus_197#0 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 597
consensus_197#1 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 419
consensus_197#2 GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 378
************************************************************
consensus_197#0 GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 657
consensus_197#1 GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA---------- 469
consensus_197#2 GAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 438
*********************** ************************
consensus_197#0 TGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAAC 717
consensus_197#1 ------------------------------------------------------------
consensus_197#2 TGTTCTTCTCGTGGTTGGTGTGCGTGCCC------------------------------- 467
consensus_197#0 GAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGG 777
consensus_197#1 ------------------------------------------------------------
consensus_197#2 ------------------------------------------------------------
consensus_197#0 TGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGA 837
consensus_197#1 ------------------------------------------------------------
consensus_197#2 ------------------------------------------------------------
consensus_197#0 AAATGTCGTGGGCCAGGATAGCC 860
consensus_197#1 -----------------------
consensus_197#2 -----------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |