cluster # 1992

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1992 cluster # 1992 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1992#0 length = 578 sequences # 1

consensus_1992#1 length = 561 sequences # 1

consensusID : consensus_1992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTTCTTTAAGCAGATAGAAACAATATTTTAAAATAGTTCTTATTTTATTTAAAATAATTAATTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAGAAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCCCCACTTTTCATGGCGTATGAAATATATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAAACTATTGCATAAACATTTAGCCAAACATCTTATTGTAGTCAAGCAGTACGTGAGTGAATAAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATATATATTTTTATTATATATATAGATTAAATTTATTTTGAAATTAAAAGAAAAACAATGTCTTTTTTGCCGGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA]

[+] EMBL BI509274             [AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTTCTTTAAGCAGATAGAAACAATATTTTAAAATAGTTCTTATTTTATTTAAAATAATTAATTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAGAAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCCCCACTTTTCATGGCGTATGAAATATATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAAACTATTGCATAAACATTTAGCCAAACATCTTATTGTAGTCAAGCAGTACGTGAGTGAATAAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATATATATTTTTATTATATATATAGATTAAATTTATTTTGAAATTAAAAGAAAAACAATGTCTTTTTTGCCGGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA]




>consensus_1992#0
AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTT
CTTTAAGCAGATAGAAACAATATTTTAAAATAGTTCTTATTTTATTTAAAATAATTAATT
AAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAGAAAATTC
GATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCCCCACTTTTCATGGCGTAT
GAAATATATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAAACTATTGCATAA
ACATTTAGCCAAACATCTTATTGTAGTCAAGCAGTACGTGAGTGAATAAAAAAGCTTTAT
AAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATATATATTTTTATTATATATATAGA
TTAAATTTATTTTGAAATTAAAAGAAAAACAATGTCTTTTTTGCCGGTACTTCTTAACTG
GGGGGAGGATTTGAAGACACCTTATTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAG
TTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA

consensusID : consensus_1992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATATCAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGATAAAAATAAATTTCAAGTATCATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGTTAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGAAGAAAAACAGGATGAACATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAACAATGTGATATTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGCACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTACAGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGTTCAGAAGAATCCCATATCACAAAGAGGACAAGAACA]

[+] EMBL BI504428             [TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATATCAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGATAAAAATAAATTTCAAGTATCATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGTTAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGAAGAAAAACAGGATGAACATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAACAATGTGATATTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGCACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTACAGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGTTCAGAAGAATCCCATATCACAAAGAGGACAAGAACA]




>consensus_1992#1
TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTT
CTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATATCA
GCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGATAA
AAATAAATTTCAAGTATCATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGTTAA
AGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGAAGAAAAACAGGATGAACATGG
ATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAACAATGTGATATTGATCA
ATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGCACCAAGAAAAGAGAT
TGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTACAGGAAAACCTGCTTT
AAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGTTCAGAAGAATCCCAT
ATCACAAAGAGGACAAGAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1992#0      AGATTCAAAATTATACAATTTTATTTACATGAGCTAGTTGCTAATTGAATGTTCGCGCTT 60
consensus_1992#1      --TTATCCCTTTGACCAGCTTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCT 58
                         *      **   **  **  *  ** *    *   * ** *     * *   *   *

consensus_1992#0      CTTTAAGCAGATAGAAACAATATTTTAA----AATAGTTC-TTATTTTATTTAAAATAAT 115
consensus_1992#1      TTCTTTCCTGACGATACTGATATTTTAATGCTAAGACCTCGTCGCTGTTTTCGCAGATAT 118
                       * *   * **    *   *********    ** *  ** *   * * **   *   **

consensus_1992#0      TAA--TTAAAAGTTAAAAATTAATATTTTGGCAATTAAAATCTTTCTATTTTCTATTTAG 173
consensus_1992#1      CAGCCTTATAAAAGAATTATAGATCGTACATCCAGTGGAACATCTACAATACAAGCTGAT 178
                       *   *** **   **  **  **  *    * * *  **  * *  * *      * * 

consensus_1992#0      AAAATTCGATTTCCAGAAAACTCTATATGTTTCTTGATTATCGTTACCC----CCACTTT 229
consensus_1992#1      AAAAATAAATTTCAAGTAT-CATTAGATGTTCAACAATTTGCTCCAGAAGAAATGACTGT 237
                      **** *  ***** ** *  *  ** *****     ***  *   *         *** *

consensus_1992#0      TCATGGCGTATGAAATA-TATATTCGCGCGTAGGAATCATTATAATAGAATTCGAACGAA 288
consensus_1992#1      TAAAGTTGTAGGAAAGAATGTAGTTGTCGAAGGCAAACATGA--AGAAAAACAGGATGAA 295
                      * * *  *** **** * * ** * *      * ** *** *  * * **   * * ***

consensus_1992#0      ACTATTGCATAAACATTTAGCCAAACATCTTAT-TGTAGTCAAGCAGTACGTGAGTGAAT 347
consensus_1992#1      -------CATGGATGGATATCCAGGCATTTTGTACGAAAGTATATTGTACCAGAAC-AAT 347
                             ***  *    ** ***  *** ** *  * *   *    ****  **   ***

consensus_1992#0      AAAAAAGCTTTATAAAAGAAAAGAAAATTTTAAGTGAATTATTTTATATAT-ATATTTTT 406
consensus_1992#1      GTGATA--TTGATCAATTAAAATCAAATTTATCTTCTGATGGAATATTGATGATCACTGC 405
                         * *  ** ** **  ****  ******    *    *    ***  ** **   *  

consensus_1992#0      ATTATATATATAGATTAAATTTATTTTGAA-ATTAAAAGAAAAACAATGTCTTTTTTGCC 465
consensus_1992#1      ACCAAGAAAAGAGATTGATCCAACATCAAAGAATGAAAGAATTATTAAAATTCAAATTAC 465
                      *  *   * * ***** *    *  *  ** * * ******  *  *    *    *  *

consensus_1992#0      GGTACTTCTTAACTGGGGGGAGGATTTGAAGACACCTTATTATCCCTTTGA----CCAGC 521
consensus_1992#1      AGGAAAACCTGCTTTAAGAGATGATACAAAACCAATTGAAAAACAAAAGGAAAATCAAGT 525
                       * *   * *   *   * ** ***   **  **  * *  * *     **    * ** 

consensus_1992#0      TTCTTGGACTTCCATTGAGTTCTGAAGATTTATCAACATCTTTCTTTCCTGACGATA 578
consensus_1992#1      TCAGAAGAATCCCAT--ATCACAAAGAGGACAAGAACA------------------- 561
                      *     ** * ****  *   *  *      *  ****

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)