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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2016 cluster # 2016       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2016#0 length = 532 sequences # 1  
 consensus_2016#1 length = 218 sequences # 1  
consensusID : consensus_2016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence 
                              [ATTCTCGTTTCCATTCCCCACCATCCTCGCAGCGAGAAGTGCAGCGTTAATTAGCGTAATAAGGAATCCAACGTTCCTTGCGATAATATTGTGAATCGAATCGCGCCCGGATCATTTCGCCTCGATCCTTGTCGTCGGATCCTTCGTTCGTTCGTTCGTTCGTTCGTTGAGAAGAAAAAAATTGGGAGAAATTGGCGGGGATGTCGGTCGAACGAGTCGAACGTACGAATTGAAGTGTACGCGCGTTTGCTCCGATTTCGAGAGAGGAGGTAGAGGAGAAGAAACGGGGCCAAAATTTAGAGATTCGAGTTATCGATCGAACTGAACGTTTCGAAATTTTTAAAAGTTTAAAGTACAAATTAACGATGCCACGTTGATACGATATCTTGGATGCTATCTTTTATTAATTTCTAGGATATTAGCGAAGATTTTAACGCGACTGAAATGTCTCGATACATCGTGTTTCTTTTATAACGGGATATGACGATGAAATGAATTATGAAATTATTAAATTTACTTGTAATTTATTTCT]

[+] EMBL BI509892             [ATTCTCGTTTCCATTCCCCACCATCCTCGCAGCGAGAAGTGCAGCGTTAATTAGCGTAATAAGGAATCCAACGTTCCTTGCGATAATATTGTGAATCGAATCGCGCCCGGATCATTTCGCCTCGATCCTTGTCGTCGGATCCTTCGTTCGTTCGTTCGTTCGTTCGTTGAGAAGAAAAAAATTGGGAGAAATTGGCGGGGATGTCGGTCGAACGAGTCGAACGTACGAATTGAAGTGTACGCGCGTTTGCTCCGATTTCGAGAGAGGAGGTAGAGGAGAAGAAACGGGGCCAAAATTTAGAGATTCGAGTTATCGATCGAACTGAACGTTTCGAAATTTTTAAAAGTTTAAAGTACAAATTAACGATGCCACGTTGATACGATATCTTGGATGCTATCTTTTATTAATTTCTAGGATATTAGCGAAGATTTTAACGCGACTGAAATGTCTCGATACATCGTGTTTCTTTTATAACGGGATATGACGATGAAATGAATTATGAAATTATTAAATTTACTTGTAATTTATTTCT]




>consensus_2016#0
ATTCTCGTTTCCATTCCCCACCATCCTCGCAGCGAGAAGTGCAGCGTTAATTAGCGTAAT
AAGGAATCCAACGTTCCTTGCGATAATATTGTGAATCGAATCGCGCCCGGATCATTTCGC
CTCGATCCTTGTCGTCGGATCCTTCGTTCGTTCGTTCGTTCGTTCGTTGAGAAGAAAAAA
ATTGGGAGAAATTGGCGGGGATGTCGGTCGAACGAGTCGAACGTACGAATTGAAGTGTAC
GCGCGTTTGCTCCGATTTCGAGAGAGGAGGTAGAGGAGAAGAAACGGGGCCAAAATTTAG
AGATTCGAGTTATCGATCGAACTGAACGTTTCGAAATTTTTAAAAGTTTAAAGTACAAAT
TAACGATGCCACGTTGATACGATATCTTGGATGCTATCTTTTATTAATTTCTAGGATATT
AGCGAAGATTTTAACGCGACTGAAATGTCTCGATACATCGTGTTTCTTTTATAACGGGAT
ATGACGATGAAATGAATTATGAAATTATTAAATTTACTTGTAATTTATTTCT

consensusID : consensus_2016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence 
                              [CACCGATTAAAATCTAACGTGGATTAGCGATGCGACGTTGAATAGAAAATGTTTCGAATGAAAGATAATTTTCGAAAATTTTGAATTTTAATAAATCTTTCCCCAAGTTTAAAATATTACGATATCAATAATTTAAAAACGCCATCTAAACGCCATGAGAAGAGAAATAAATTACAAGTAAATTTAATAATTTCATAATTCATTTCATCGTCATATCA]

[+] EMBL BI504351             [CACCGATTAAAATCTAACGTGGATTAGCGATGCGACGTTGAATAGAAAATGTTTCGAATGAAAGATAATTTTCGAAAATTTTGAATTTTAATAAATCTTTCCCCAAGTTTAAAATATTACGATATCAATAATTTAAAAACGCCATCTAAACGCCATGAGAAGAGAAATAAATTACAAGTAAATTTAATAATTTCATAATTCATTTCATCGTCATATCA]




>consensus_2016#1
CACCGATTAAAATCTAACGTGGATTAGCGATGCGACGTTGAATAGAAAATGTTTCGAATG
AAAGATAATTTTCGAAAATTTTGAATTTTAATAAATCTTTCCCCAAGTTTAAAATATTAC
GATATCAATAATTTAAAAACGCCATCTAAACGCCATGAGAAGAGAAATAAATTACAAGTA
AATTTAATAATTTCATAATTCATTTCATCGTCATATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2016#0      ATTCTCGTTTCCATTCCCCACCATCCTCGCAGCGAGAAGTGCAGCGTTAATTAGCGTAAT 60
consensus_2016#1      ------------------------------------------------------------
                                                                                  

consensus_2016#0      AAGGAATCCAACGTTCCTTGCGATAATATTGTGAATCGAATCGCGCCCGGATCATTTCGC 120
consensus_2016#1      ------------------------------------------------------------
                                                                                  

consensus_2016#0      CTCGATCCTTGTCGTCGGATCCTTCGTTCGTTCGTTCGTTCGTTCGTTGAGAAGAAAAAA 180
consensus_2016#1      ------------------------------------------------------------
                                                                                  

consensus_2016#0      ATTGGGAGAAATTGGCGGGGATGTCGGTCGAACGAGTCGAACGTACGAATTGAAGTGTAC 240
consensus_2016#1      ------------------------------------------------------------
                                                                                  

consensus_2016#0      GCGCGTTTGCTCCGATTTCGAGAGAGGAGGTAGAGGAGAAGAAACGGGGCCAAAATTTAG 300
consensus_2016#1      ------------------------------------------------------------
                                                                                  

consensus_2016#0      AGATTCGAGTTATCGATCGAACTGAACGTTTCGAAATTTTTAAAAGTTTAAAGTACAAAT 360
consensus_2016#1      ----------------------------------CACCGATTAAAATCTAACGT--GGAT 24
                                                         *    * *** * *** **    **

consensus_2016#0      TAACGATGCCACGTTGAT---ACGATATCTTGGATGCTATCT--TTTATTAATTTCTAGG 415
consensus_2016#1      TAGCGATGCGACGTTGAATAGAAAATGTTTCGAATGAAAGATAATTTTCGAAAATTTTGA 84
                      ** ****** *******    *  ** * * * ***  *  *  ***   **  * * * 

consensus_2016#0      ATATTAGCGAAGATTTTAACGCGACTGAAATGTCTCGATACATCGTGTTT-------CTT 468
consensus_2016#1      ATTTTAATAAATCTTTCCCCAAGTTTAAAATATTACGATATCAATAATTTAAAAACGCCA 144
                      ** ***   **  ***   *  *  * **** *  *****       ***       *  

consensus_2016#0      TTATAACGGGATATGACGATGAAATGAATTATGAAATTATTAAATTTACTTGTAATTTAT 528
consensus_2016#1      TCTAAACGCCATGAGAAGA-GAAATAAATTACAAGTAAATTTAATAATTTCATAATTCAT 203
                      *   ****  **  ** ** ***** *****  *    *** ***    *  ***** **

consensus_2016#0      TTCT----------- 532
consensus_2016#1      TTCATCGTCATATCA 218
                      ***


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)