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Apis mellifera
cluster # 2157 cluster # 2157       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2157#0 length = 588 sequences # 1  
 consensus_2157#1 length = 511 sequences # 1  
consensusID : consensus_2157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence 
                              [AATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTACGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTTGTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAACCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAGAAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT]

[+] EMBL BI503974             [AATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTACGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTTGTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAACCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAGAAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT]




>consensus_2157#0
AATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATT
CCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTA
GTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAA
GTGCAACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACAT
GTGTACGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAA
AGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCA
CGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCG
AGCTTGTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAG
GCCAACCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCG
GACAGAAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT

consensusID : consensus_2157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence 
                              [AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTGGTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAGACCTGTCGGACATCGGACTGTTGCCAACCTGGTCACGCCAATCTCGCTTGCTTTGTCGCATCTGTGATTCAATTT]

[+] EMBL BI510195             [AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTAAAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATTGAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAGACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCAACAGTGTGAAGAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTGGTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAGACCTGTCGGACATCGGACTGTTGCCAACCTGGTCACGCCAATCTCGCTTGCTTTGTCGCATCTGTGATTCAATTT]




>consensus_2157#1
AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTA
AAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATT
GAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAG
ACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCA
ACAGTGTGAAGAGATATTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCT
TGGAAAGAGCACGACGGAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCG
ACTTACTCTCGAGTTGGTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCT
CAATGTCGAACGCCAGACCTGTCGGACATCGGACTGTTGCCAACCTGGTCACGCCAATCT
CGCTTGCTTTGTCGCATCTGTGATTCAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2157#0      -------------------------------------------------------AATTA 5
consensus_2157#1      AGAACGTTATTTAAACTCACGTAACTCAAAGATATGCACGAGTGGAAAAATATCGAATTA 60
                                                                             *****

consensus_2157#0      AAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATT 65
consensus_2157#1      AAATCGCAAAACTGATCGCTTTTGCGTGACTTTAGAAAGTACAGGAAATTAGATTCCATT 120
                      ************************************************************

consensus_2157#0      GAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAG 125
consensus_2157#1      GAACGTATTTCGAGATAACTATAATAATAATAATTGGAATTTTGTTTGTCTGGTAGTTAG 180
                      ************************************************************

consensus_2157#0      ACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCA 185
consensus_2157#1      ACACGAATTTCTTATTTTAATTTAAATAAATACAAGAGAATCGTTTGATAATTAAGTGCA 240
                      ************************************************************

consensus_2157#0      ACAGTGTGAAGGTAATGAACCTAACCTAAAAATAAAATTTAAGAGAAATATACATGTGTA 245
consensus_2157#1      ACAGTGTGAAG------------------------------------------------- 251
                      ***********                                                 

consensus_2157#0      CGTGATTTCTGATTGGATTTTTGGAGACGAGAAGTATCGTGGATGAATCTTAAAAAGATA 305
consensus_2157#1      -------------------------------------------------------AGATA 256
                                                                             *****

consensus_2157#0      TTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACG 365
consensus_2157#1      TTGATTTCACAAAAGGAACGAAAGATCGCATGGAACGCATTCCTTGGAAAGAGCACGACG 316
                      ************************************************************

consensus_2157#0      GAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGCTT 425
consensus_2157#1      GAAATGGAGACAGAGTACACCGGCTCACCCTGGTCGATACATCGACTTACTCTCGAGTTG 376
                      ********************************************************* * 

consensus_2157#0      GTCACAGTTGGTGACTTTGCCCTTCCAGTCACAGGTCTGTTTGTCCAAATCAAAGGCCAA 485
consensus_2157#1      GTCGCAATTCTTCACGTTCGTCTTCCAGTCGCACGTTTGCCTCTCAATGTCGAACGCCAG 436
                      *** ** **  * ** **   ********* ** ** **  * ** *  ** ** **** 

consensus_2157#0      CCCGCTGGGGCACGTGATTTGCTTCAGGCCGGATTTCGTGCACCTGTGCGTGTCGGACAG 545
consensus_2157#1      ACCTGTCGGACATCGGACT-GTTGCCAACCTGGTCACGCCAATCT-CGCTTGCTTTGTCG 494
                       **  * ** **   ** * * * *   ** * *  **   * **  ** **       *

consensus_2157#0      AAAACAAAGGGGATGCCGTTTAATCAAATAGAAATCTGTATGT 588
consensus_2157#1      ----CATCTGTGATTCAATTT---------------------- 511
                          **   * *** *  ***


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)