cluster # 2220

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Apis mellifera
cluster # 2220 cluster # 2220 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2220#0 length = 444 sequences # 1

consensus_2220#1 length = 419 sequences # 1

consensusID : consensus_2220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [CGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACTAGAAATCTATTTTAAAAAAGCGGTCAGACTTTTAACAGACTTCAACTGTGCATCGCGTTTAAATCCTGACAAATCGATTTACGGCAAAAGAAAGGTAAAAGTACATGAAATGTATGAAAGACTGAATTTCCATTTTAATAATTTGAATAAAATACACGGGTAAAAATTTCACGAGAAATAATATTCACCAGGGAAAAACAAGCACATACGAAATCCCAAATTTTTCCATAAATTGTGCAAGATACGAGTTCTTCCTCCTACTCCTCCTAGCTCGTTCCAAGCTCTTCCGGCTATAAACCGTCTATAGACCGTCTATAGACCGTCTATAGATAACAGCTTATACCCTGTTCATCTGTTTGATCGAGCAAGAGAAGCTTTCAACGT]

[+] EMBL BI508842             [CGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACTAGAAATCTATTTTAAAAAAGCGGTCAGACTTTTAACAGACTTCAACTGTGCATCGCGTTTAAATCCTGACAAATCGATTTACGGCAAAAGAAAGGTAAAAGTACATGAAATGTATGAAAGACTGAATTTCCATTTTAATAATTTGAATAAAATACACGGGTAAAAATTTCACGAGAAATAATATTCACCAGGGAAAAACAAGCACATACGAAATCCCAAATTTTTCCATAAATTGTGCAAGATACGAGTTCTTCCTCCTACTCCTCCTAGCTCGTTCCAAGCTCTTCCGGCTATAAACCGTCTATAGACCGTCTATAGACCGTCTATAGATAACAGCTTATACCCTGTTCATCTGTTTGATCGAGCAAGAGAAGCTTTCAACGT]




>consensus_2220#0
CGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACT
AGAAATCTATTTTAAAAAAGCGGTCAGACTTTTAACAGACTTCAACTGTGCATCGCGTTT
AAATCCTGACAAATCGATTTACGGCAAAAGAAAGGTAAAAGTACATGAAATGTATGAAAG
ACTGAATTTCCATTTTAATAATTTGAATAAAATACACGGGTAAAAATTTCACGAGAAATA
ATATTCACCAGGGAAAAACAAGCACATACGAAATCCCAAATTTTTCCATAAATTGTGCAA
GATACGAGTTCTTCCTCCTACTCCTCCTAGCTCGTTCCAAGCTCTTCCGGCTATAAACCG
TCTATAGACCGTCTATAGACCGTCTATAGATAACAGCTTATACCCTGTTCATCTGTTTGA
TCGAGCAAGAGAAGCTTTCAACGT

consensusID : consensus_2220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CAATTGTCGATCTATAAAAATTTTATGCCATTTTAGAGAAAGAAGCTTGCCATTTTTAAATATTATCGATTAATTCGAAAATAATTTCGAAGAAGAAAAACTCGTATACGTATACAACGAACTCTCTCCCCTCGTTGAACTGAATTTCCAATGATGAATAGTGTATGCTCCCAAAGTACAAGAGAAAAAAAAGTCTCTGAATTGAAAGATTACCCTTCATGATAAAAAGAAGGAAAAAAACAGATTCGATAGAATATATAACTAACATTTACTAGTACTAACTATAAAATAACAAACTTCTCAGACAACAGAAGCATTAAACGAGAAACTTTCCCTCGCTGAATCCTACCTTTCGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACTAGAAAT]

[+] EMBL BI517188             [CAATTGTCGATCTATAAAAATTTTATGCCATTTTAGAGAAAGAAGCTTGCCATTTTTAAATATTATCGATTAATTCGAAAATAATTTCGAAGAAGAAAAACTCGTATACGTATACAACGAACTCTCTCCCCTCGTTGAACTGAATTTCCAATGATGAATAGTGTATGCTCCCAAAGTACAAGAGAAAAAAAAGTCTCTGAATTGAAAGATTACCCTTCATGATAAAAAGAAGGAAAAAAACAGATTCGATAGAATATATAACTAACATTTACTAGTACTAACTATAAAATAACAAACTTCTCAGACAACAGAAGCATTAAACGAGAAACTTTCCCTCGCTGAATCCTACCTTTCGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACTAGAAAT]




>consensus_2220#1
CAATTGTCGATCTATAAAAATTTTATGCCATTTTAGAGAAAGAAGCTTGCCATTTTTAAA
TATTATCGATTAATTCGAAAATAATTTCGAAGAAGAAAAACTCGTATACGTATACAACGA
ACTCTCTCCCCTCGTTGAACTGAATTTCCAATGATGAATAGTGTATGCTCCCAAAGTACA
AGAGAAAAAAAAGTCTCTGAATTGAAAGATTACCCTTCATGATAAAAAGAAGGAAAAAAA
CAGATTCGATAGAATATATAACTAACATTTACTAGTACTAACTATAAAATAACAAACTTC
TCAGACAACAGAAGCATTAAACGAGAAACTTTCCCTCGCTGAATCCTACCTTTCGTTAAT
TCGCACGATAATATACAAACTGAGCTGATATATCGCGGGATAAAAACTTGACTAGAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2220#0      ---------------CGTTAATTCGCACGATAATATACAAACTGAGCTGATATATCGCGG 45
consensus_2220#1      CAATTGTCGATCTATAAAAATTTTATGCCATTTTAGAGAAAGAAGCTTGCCATTTTTAAA 60
                                         * **    * **  ** * ***      **  ** *     

consensus_2220#0      GATAAAAACTTGACTAGAAATCTATTTTAAAAAAG-------CGGTCAGACTTTTAACAG 98
consensus_2220#1      TATTATCGATTAATTCGAAAATAATTTCGAAGAAGAAAAACTCGTATACGTATACAACGA 120
                       ** *    ** * * ****   ****  ** ***       **   *    *  ***  

consensus_2220#0      ACTTCAACTGTGCATCGCGTTTAAATCCTGACAA--ATCGATTTACGGCAAAAGAAAGGT 156
consensus_2220#1      ACTCTCTCCCCTCGTTGAACTGAATTTCCAATGATGAATAGTGTATG-CTCCCAAAGTAC 179
                      ***    *    * * *   * ** * *  *  *  *    * ** * *     **    

consensus_2220#0      AAAAGTACATGAAATGTATGAAAGACTGAATTTCCATTT-TAATAATTTGAATAAAATAC 215
consensus_2220#1      AAGAGAAAAAAAAGTCTCTGAATTGAAAGATTACCCTTCATGATAAAAAGAAGGAAAAAA 239
                      ** ** * *  ** * * ****       *** ** **  * ****   ***  *** * 

consensus_2220#0      ACGGGTAAAAATTTCACGAGAAATAATATTCACCAGGGAAAAACAAGCACATACGAAATC 275
consensus_2220#1      ACAGATTCGATAGAATATATAACTAACATTTACTAG-----TACTAAC---TATAAAATA 291
                      ** * *   *        * ** *** *** ** **      ** * *   **  **** 

consensus_2220#0      CCAAATTTTTCCATAAATTGT-GCAAGATACGAGTT-CTTCCTCCTACTCCTCCTAGCTC 333
consensus_2220#1      ACAAACTTCTCAGACAACAGAAGCATTAAACGAGAAACTTTCCCTCGCTGAATCCTACCT 351
                       **** ** **    **  *  ***  * *****   *** * *   **    *   *  

consensus_2220#0      GTTCCAAGCTCTTCCGGCTATAAACCGTCTATAGACCGTCTATAGACCGTCTATAGATAA 393
consensus_2220#1      TTCGTTAATTCGCACGATAATATACAAACTGA-----GCTGATATATCGCG---GGATAA 403
                       *    *  **   **   *** **   **       *   *** * **      *****

consensus_2220#0      CAGCTTATACCCTGTTCATCTGTTTGATCGAGCAAGAGAAGCTTTCAACGT 444
consensus_2220#1      AAACTTGACTAGAAAT----------------------------------- 419
                       * ***         *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)