|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTGTTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGGTAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTGCTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTACAAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCGCTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAATTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA]
[+] EMBL BI508841 [ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTGTTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGGTAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTGCTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTACAAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCGCTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAATTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA]
consensusID : consensus_2223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[GCCTTTAAACGATATGTTCTGTTTAGATGAAATCAAACCATATCATGATTTATCCAATTTTACTCTATACAATATTCTTATTATGTGTTATGCAATTTTTATAGAAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAATTTAATCATTATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTATTATTCCTTATTAAGTATCAAGCAACCAAAAAACATTAATTAATGAATAAATTTATAGTTATTAATTTGTATATACTCAATTTTTTTAAACAAGTGATATTCATTATTTAGAAAATATATACTATTATGATATATATGATATAAATGCAGAAATATTGTACACGTTATATGAATCTTTAATTCAACGCGATTTTCTATCTTTGCAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCACGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTG]
[+] EMBL BI510170 [GCCTTTAAACGATATGTTCTGTTTAGATGAAATCAAACCATATCATGATTTATCCAATTTTACTCTATACAATATTCTTATTATGTGTTATGCAATTTTTATAGAAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAATTTAATCATTATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTATTATTCCTTATTAAGTATCAAGCAACCAAAAAACATTAATTAATGAATAAATTTATAGTTATTAATTTGTATATACTCAATTTTTTTAAACAAGTGATATTCATTATTTAGAAAATATATACTATTATGATATATATGATATAAATGCAGAAATATTGTACACGTTATATGAATCTTTAATTCAACGCGATTTTCTATCTTTGCAGGTAGAAATGGACAGAGATCATAGGGAACAACACGATCACGATAATATAAATGAAAACGAGGAAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2223#0 ATAGAAGTTTGAAATCATTGATCTGTATGCAACTGTACATCGATGGCAGCAAATGCATTG 60
consensus_2223#1 -------------GCCTTTAAACGATATGT---TCTGTTTAGATGAAATCAAACCATATC 44
* ** * * **** * * * **** * **** *
consensus_2223#0 TTGAATAGCTATAAAGGTGAACAGTGGGGTTAGACTCGGGGGAAGGAGGCAAAGGAAAGG 120
consensus_2223#1 ATGATT---TATCCAATTTTACTCTATA-CAATATTCTTATTATG--TGTTATGCAATTT 98
*** * *** * * ** * * * ** * * * * * **
consensus_2223#0 TAAAGGTTAGAAGAGGTTATGAACTTTAACCCACGGATAGTTGACGAAGTTTAGTTGCTG 180
consensus_2223#1 TTATAG--AAAAGATTTTCCAAATATTTTCTTTTAGATATATTACAA--TTTAATCATT- 153
* * * * **** ** ** ** * **** * ** * **** * *
consensus_2223#0 CTATGAATTGTCCAAATGATGCATAGTCAAATTTGTCATCGTTATTAATAATATAGGTAG 240
consensus_2223#1 --ATGAAATAAATATTTAATTATTTATTCATTTGTTTACATATAAATATAATATTATTAT 211
***** * * * ** * * * ** * * ** ******* **
consensus_2223#0 AAATGGACAGAGATCATAGGGAACAACACGATCATGATAATATAAATGAAAACGAGGAAG 300
consensus_2223#1 TATTCC-------TTATTAAGTATCAAGCAACCA-AAAAACATTAATTAATGAATAAATT 263
* * * ** * * * * * ** * ** ** *** ** *
consensus_2223#0 AACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATGTGG 360
consensus_2223#1 TATAGTTATTAATT-TGTATATACTCAATTTTTTTAAACAA-GTGATATTCATTATTTAG 321
* * * ** ** ** * * ***** * * ** ** * * ** ** * *
consensus_2223#0 CTGATGTTGAAATAGAGCGGGATATGGAAGTTGATCAAAATGATCGCATTGAAAATTTAC 420
consensus_2223#1 AAAATAT-ATACTATTATGATATATA-----TGATATAAATG-------CAGAAATATTG 368
** * * ** * **** **** ***** **** *
consensus_2223#0 AAGATGATAAATTAGATCAAAATATAGGAAGAAATTTTCATAATTTAGCGCATCATCCCG 480
consensus_2223#1 TACACGTTATATGAATCTTTAATTCA--ACGCGATTTTC-TATCTTTGCAGGTAGAAATG 425
* * * ** ** * *** * * * ****** ** ** ** * *
consensus_2223#0 CTATGAGAGACATGGAAAGAGATCAGAATAATCATATTGATAATATGCATGATGATAAAA 540
consensus_2223#1 ----GACAGAGATC-ATAGGGAACAACACGATCA---CGATAATATAAATGAAAACGAGG 477
** *** ** * ** ** ** * **** ******** **** * *
consensus_2223#0 TTGATCATAAAATGGGACGAGATTTTCGTAATTTGAGTTCTCATACTGGTA--------- 591
consensus_2223#1 AAGAACAAAAAGTAGGAATGGATTTTCGTAATTTATCTCGTCACCATGGTGTGGATCATG 537
** ** *** * *** ************** * *** ****
consensus_2223#0 ------
consensus_2223#1 TGGCTG 543
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |