cluster # 2250

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Apis mellifera
cluster # 2250 cluster # 2250 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2250#0 length = 472 sequences # 1

consensus_2250#1 length = 449 sequences # 1

consensusID : consensus_2250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CGAATATTCTAATTTCATTAATTGACGCACGCATTACACGGTCGATCATTAGTTTTGTTTTTTTTTTTCTTGTTTGTTCATTTCGTCAGAATATATATTAAAAAGAGGAAACGGTAAACAAAAAAAAAAATAGCGAGCGAAATTGTATTTTTAATATATATCTGTATAATCTGAATATATATATATATATATATATATATATATATATATATATATATATATATATATCTATACATATATATATATACATATATATATTCAGAATATATATATATTTTCTGGAGTTTCGCCACTAAAAAGGATATTGCGATTCAGCTTCGCNNNGAATTTTATATATAATTATCGAGAAGNNNATTATCATTATTATAATTATTATAATTATTATCATTATTATGAAAAATATAGCGTGTTCTCTTAAAGTGAAAATTTATATATGTGTGTGTGTGTGTGCGTGTGTGTGTATGTATATATA]

[+] EMBL BI503732             [CGAATATTCTAATTTCATTAATTGACGCACGCATTACACGGTCGATCATTAGTTTTGTTTTTTTTTTTCTTGTTTGTTCATTTCGTCAGAATATATATTAAAAAGAGGAAACGGTAAACAAAAAAAAAAATAGCGAGCGAAATTGTATTTTTAATATATATCTGTATAATCTGAATATATATATATATATATATATATATATATATATATATATATATATATATATATCTATACATATATATATATACATATATATATTCAGAATATATATATATTTTCTGGAGTTTCGCCACTAAAAAGGATATTGCGATTCAGCTTCGCNNNGAATTTTATATATAATTATCGAGAAGNNNATTATCATTATTATAATTATTATAATTATTATCATTATTATGAAAAATATAGCGTGTTCTCTTAAAGTGAAAATTTATATATGTGTGTGTGTGTGTGCGTGTGTGTGTATGTATATATA]




>consensus_2250#0
CGAATATTCTAATTTCATTAATTGACGCACGCATTACACGGTCGATCATTAGTTTTGTTT
TTTTTTTTCTTGTTTGTTCATTTCGTCAGAATATATATTAAAAAGAGGAAACGGTAAACA
AAAAAAAAAATAGCGAGCGAAATTGTATTTTTAATATATATCTGTATAATCTGAATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATCTATACATATAT
ATATATACATATATATATTCAGAATATATATATATTTTCTGGAGTTTCGCCACTAAAAAG
GATATTGCGATTCAGCTTCGCNNNGAATTTTATATATAATTATCGAGAAGNNNATTATCA
TTATTATAATTATTATAATTATTATCATTATTATGAAAAATATAGCGTGTTCTCTTAAAG
TGAAAATTTATATATGTGTGTGTGTGTGTGCGTGTGTGTGTATGTATATATA

consensusID : consensus_2250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [CGTTNNGCTTTACCTTTTTAAGGATCGTATCCGAATTACGATACCGGTTACATTAGATGAAATAAAATAGCATTATCTTCCACAAAATATTTCGAATTTCAAGAGCAGCTGGCTGCGAAAAAGGTACCATAGAGAGATTCGTTCGTCATTGATGGAACACGATCACAAGTATTGTACCTTACATTCCTTTGGCTATAAAATATAATAGTAAGAACATGACGACCGTGTGCATCGTGCGCTTTATGAATCATGCAATTATCATACCGCAAAAAAAAAAGAATAGAAAGAAGAGAGACAGAAAAAAAAAAAGAAATAGAGAAAAATATAGAAAATTGGGGAATTCATGCGATTAATTCATTAATTATAATCGGAAAAAGATATTTTTCAATTCGATTTGTGAATATGATATACGAATATTCTAATTTCATTAATTGACGCACGCATTACAC]

[+] EMBL BI511109             [CGTTNNGCTTTACCTTTTTAAGGATCGTATCCGAATTACGATACCGGTTACATTAGATGAAATAAAATAGCATTATCTTCCACAAAATATTTCGAATTTCAAGAGCAGCTGGCTGCGAAAAAGGTACCATAGAGAGATTCGTTCGTCATTGATGGAACACGATCACAAGTATTGTACCTTACATTCCTTTGGCTATAAAATATAATAGTAAGAACATGACGACCGTGTGCATCGTGCGCTTTATGAATCATGCAATTATCATACCGCAAAAAAAAAAGAATAGAAAGAAGAGAGACAGAAAAAAAAAAAGAAATAGAGAAAAATATAGAAAATTGGGGAATTCATGCGATTAATTCATTAATTATAATCGGAAAAAGATATTTTTCAATTCGATTTGTGAATATGATATACGAATATTCTAATTTCATTAATTGACGCACGCATTACAC]




>consensus_2250#1
CGTTNNGCTTTACCTTTTTAAGGATCGTATCCGAATTACGATACCGGTTACATTAGATGA
AATAAAATAGCATTATCTTCCACAAAATATTTCGAATTTCAAGAGCAGCTGGCTGCGAAA
AAGGTACCATAGAGAGATTCGTTCGTCATTGATGGAACACGATCACAAGTATTGTACCTT
ACATTCCTTTGGCTATAAAATATAATAGTAAGAACATGACGACCGTGTGCATCGTGCGCT
TTATGAATCATGCAATTATCATACCGCAAAAAAAAAAGAATAGAAAGAAGAGAGACAGAA
AAAAAAAAAGAAATAGAGAAAAATATAGAAAATTGGGGAATTCATGCGATTAATTCATTA
ATTATAATCGGAAAAAGATATTTTTCAATTCGATTTGTGAATATGATATACGAATATTCT
AATTTCATTAATTGACGCACGCATTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2250#0      CGAATATTCTAATTTCATTAATTGACGCACGCATTACACGGTCGATCATTAGTTTTGTTT 60
consensus_2250#1      ----CGTTNNGCTTTACCTTTTTAAGGATCGTATCCGAATTACGAT-ACCGGTTACATTA 55
                            **    ***   *  ** * *  ** **   *    **** *   ***   ** 

consensus_2250#0      TTTTTTTTCTTGTTTGTTCATTTCGTCAGAATATATATTAAAAAGAGGAAACGGTAAACA 120
consensus_2250#1      GATGAAATAAAATAGCATTATCTT-CCACAAAATATTTCGAATTTCAAGAGCAGCTGGCT 114
                        *    *    *    * ** *   ** ** **** *  **       * * *    * 

consensus_2250#0      AAAAAAAAAATAGCGAGCGAAATTGTATTTTTAATATATATCTGTATAATCTGAATATAT 180
consensus_2250#1      GCGAAAAAGGTACCATAGAGAGATTCGTTCGTCATTGATGGA-ACACGATCACAAGTATT 173
                         *****  ** *      *  *   **  * **  **      *  ***  **    *

consensus_2250#0      ATATATATATATATATATATATATATATATATATATATATATATATATCTATACATATAT 240
consensus_2250#1      GTACCT-TACATTCCTTTGGCTATA-AAATATAATAGTAAGAACATGACGAC-CGTGTGC 230
                       **  * ** **   * *   **** * *****    **   * **  * *  * * *  

consensus_2250#0      ATATATACATATATATATTCAGAATATATATAT-ATTTTCTGGAGTTTCGCCACTAAAAA 299
consensus_2250#1      AT-CGTGCGC---TTTATGAATCATGCAATTATCATACCGCAAAAAAAAAAGAATAGAAA 286
                      **   * *     * ***  *  **  *  *** **       *        * ** ***

consensus_2250#0      GGATATTGCGATTCAGCTTCGCNNNGAATTTTATATATAATTATCGAGAAGNNNATTATC 359
consensus_2250#1      GAAGA----GAGACAGAAAAAAAAAAAGAAATAGAGAAAAATATAGAAAATTGGGGAATT 342
                      * * *    **  ***          *    ** * * ** *** ** **       ** 

consensus_2250#0      ATTATTATAATTATTATAATTATTATCATTATTATGAAAAATATAGCGTGTTCTCTTAAA 419
consensus_2250#1      CATGCGATTAATTCATTAATTATAATCG-------GAAAAAGATA-TTTTTCAATTCGAT 394
                        *   ** * *    ******* ***        ****** ***   * *    *  * 

consensus_2250#0      GTGAAAATTT-ATATATGTGTGTGTGTGTGTGCGTGTGTG-TGTATGTATATATA- 472
consensus_2250#1      TTGTGAATATGATATACGAATATTCTAATTTCATTAATTGACGCACGCAT-TACAC 449
                       **  *** * ***** *  * *     * *   *   **  * * * ** ** *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)