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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[CGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGCGTGCAAGAATTACACATCGTGATGATTCGATCAATTGTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGATTTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATTCATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAATTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAAAAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAAGGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTTATC]
[+] EMBL BI503646 [CGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGCGTGCAAGAATTACACATCGTGATGATTCGATCAATTGTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGATTTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATTCATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAATTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAAAAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAAGGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTTATC]
consensusID : consensus_2287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGATCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCTGCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATCGTGAAAATTTCAATATTTTNNTTTATATTTTCTTATTACTTTTTATTTTTTACTTGATTTTCTCACG]
[+] EMBL BI516203 [AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGATCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCTGCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAATTCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTAGGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACGGCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTTAAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATCGTGAAAATTTCAATATTTTNNTTTATATTTTCTTATTACTTTTTATTTTTTACTTGATTTTCTCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2287#0 ------------------------------------------------------------
consensus_2287#1 AGAGATTTCTTGACAACGGCAAGAACATTATCGGGTCGGGCGCGTATTTTCCATTCGGGA 60
consensus_2287#0 ------------------------------------------------------------
consensus_2287#1 TCGGGCCCAGGATATGCATAGGGAACAGATTCGCGTTGATAGAGATGAAGGTCCTGGTCT 120
consensus_2287#0 ---------------------------------------------------CGTTGGAAT 9
consensus_2287#1 GCTATATTCTTGCCGTTTGCGACATAAAGGCTGGAGCGAGGACTGGAATCCCGTTGGAAT 180
*********
consensus_2287#0 TCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTA 69
consensus_2287#1 TCGAGAAAGGAGTGTTCAACGCGACAGCGAAAACTGGTTTTTGGCTCAAGATCGAGCCTA 240
************************************************************
consensus_2287#0 GGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACG 129
consensus_2287#1 GGAAGTATTCCTACCACTCTGGTCAAATTAACGGGTTGGTTAACAACCATGTTATTAACG 300
************************************************************
consensus_2287#0 GCGCGTGTAAAACGGGCATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTT 189
consensus_2287#1 GCGCGTGTAAAACAGGGATTTGAAATAGGATGATATTCAATTGTTTGAATCGGGAGTTTT 360
************* ** *******************************************
consensus_2287#0 AAATTTTAAG-----CGTGCAAGAATTACACATCGTG-------ATGATTCGAT-CAATT 236
consensus_2287#1 AAATTTTAAGAAGAATGTGGAAGAATTACACATCGTGTTGAATGATGATTCGGTTCGATC 420
********** *** ***************** ******** * * **
consensus_2287#0 GTGAAAATTTCAATATTTTGCTTCTTGTTATTCTTTATTTTTTTTTATCGTTTACTTGAT 296
consensus_2287#1 GTGAAAATTTCAATATTTTNNTTTATATT--TTCTTATTACTTTTTATTTTTTACTTGAT 478
******************* ** * ** * ***** ******* **********
consensus_2287#0 TTTCTCACGGATAAAATAAGAAAGAAGAAACACTCTCGTGTTCATACGGATTACTCGATT 356
consensus_2287#1 TTTCTCACG--------------------------------------------------- 487
*********
consensus_2287#0 CATTCTTCCATTATTCATTATAATAGATCAGATAAAAAAGAAGTGTTATTACATATTTAA 416
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TTACATATTTTTTTACATATTTAAGTAGCTTGAATCGAAATTGTACTTTTAAATTGGAAA 476
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 AAAAAAACAATAAATACGATCATTGCTGATAATTAAGGAAAATTTTTTACACGTTGAAAA 536
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 GGAAATGAATAAATGAATAAAGTAGAATATAATTGCGAATTTAAAATCAATACGAATTTT 596
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 ATC 599
consensus_2287#1 ---
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |