cluster # 2325

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Apis mellifera
cluster # 2325 cluster # 2325 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2325#0 length = 507 sequences # 1

consensus_2325#1 length = 330 sequences # 1

consensusID : consensus_2325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [AAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTTCAAATTCGATCGACTTGCAGATTCGTGGCGCCGCTATTATTCACAATCTTGCCTGCAAGGAGGTAAAAACTGTGGTATTCGATGATGTTGCTGTAGAATTGACAATGGCATTGTTGCAATACTTCAATGGTAGTCCTGCTGAAGAACAGTTATATGCCTGTATGAAGTCATTGGCACGTTTTACGCAAATTAGTGGTCAAGATGTACCACAGCTTATACAAATGATTGGACCAGAACCAAACAAATTTCGTGGAACGTCTGAAAGAATTGACGAACAAATTGATCAGGTTAATAAGAAATTACGTTAAACGTAATTCAATATAATTTTATTAATAATAGAAATCGTTAAATTCCAAACGATGCAATTGAAAATGATTAATTATAGTATATAATTGAATTTTTACATAGAAATTTTATTAAAATTATCTAAATAGTGTGTTATTAAAA]

[+] EMBL BI503557             [AAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTTCAAATTCGATCGACTTGCAGATTCGTGGCGCCGCTATTATTCACAATCTTGCCTGCAAGGAGGTAAAAACTGTGGTATTCGATGATGTTGCTGTAGAATTGACAATGGCATTGTTGCAATACTTCAATGGTAGTCCTGCTGAAGAACAGTTATATGCCTGTATGAAGTCATTGGCACGTTTTACGCAAATTAGTGGTCAAGATGTACCACAGCTTATACAAATGATTGGACCAGAACCAAACAAATTTCGTGGAACGTCTGAAAGAATTGACGAACAAATTGATCAGGTTAATAAGAAATTACGTTAAACGTAATTCAATATAATTTTATTAATAATAGAAATCGTTAAATTCCAAACGATGCAATTGAAAATGATTAATTATAGTATATAATTGAATTTTTACATAGAAATTTTATTAAAATTATCTAAATAGTGTGTTATTAAAA]




>consensus_2325#0
AAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTT
CAAATTCGATCGACTTGCAGATTCGTGGCGCCGCTATTATTCACAATCTTGCCTGCAAGG
AGGTAAAAACTGTGGTATTCGATGATGTTGCTGTAGAATTGACAATGGCATTGTTGCAAT
ACTTCAATGGTAGTCCTGCTGAAGAACAGTTATATGCCTGTATGAAGTCATTGGCACGTT
TTACGCAAATTAGTGGTCAAGATGTACCACAGCTTATACAAATGATTGGACCAGAACCAA
ACAAATTTCGTGGAACGTCTGAAAGAATTGACGAACAAATTGATCAGGTTAATAAGAAAT
TACGTTAAACGTAATTCAATATAATTTTATTAATAATAGAAATCGTTAAATTCCAAACGA
TGCAATTGAAAATGATTAATTATAGTATATAATTGAATTTTTACATAGAAATTTTATTAA
AATTATCTAAATAGTGTGTTATTAAAA

consensusID : consensus_2325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [ATTTTGTAGGGCGAATTCTATATGATAAATCTTTGTTAAATGATGCAAGAGTAAAATTATTGAATATATTATCTGTTGCTGCATTAAAAGACGATGTAATCCTTTTATTACATCAGGATAGAAGGGAACATATAATTATGAATTATGCTTTCGATATTGATCGTCATCCCCAAGAAGAACAACTTCCCCTTGCACAATTTTTGGCAAATATGTTCGAAAATCTTAGTAGTTCAGAATGGCTNNTATACATATCGGAATGGCAATATCAAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTTCAA]

[+] EMBL BI510937             [ATTTTGTAGGGCGAATTCTATATGATAAATCTTTGTTAAATGATGCAAGAGTAAAATTATTGAATATATTATCTGTTGCTGCATTAAAAGACGATGTAATCCTTTTATTACATCAGGATAGAAGGGAACATATAATTATGAATTATGCTTTCGATATTGATCGTCATCCCCAAGAAGAACAACTTCCCCTTGCACAATTTTTGGCAAATATGTTCGAAAATCTTAGTAGTTCAGAATGGCTNNTATACATATCGGAATGGCAATATCAAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTTCAA]




>consensus_2325#1
ATTTTGTAGGGCGAATTCTATATGATAAATCTTTGTTAAATGATGCAAGAGTAAAATTAT
TGAATATATTATCTGTTGCTGCATTAAAAGACGATGTAATCCTTTTATTACATCAGGATA
GAAGGGAACATATAATTATGAATTATGCTTTCGATATTGATCGTCATCCCCAAGAAGAAC
AACTTCCCCTTGCACAATTTTTGGCAAATATGTTCGAAAATCTTAGTAGTTCAGAATGGC
TNNTATACATATCGGAATGGCAATATCAAACTCAAAATATAAGTAACATAAGGGTAACGA
CCAAAGTCGCAGTGCATTCGTTGCTTTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2325#0      AAACTCAAAATATAAGTAACATAAGGGTAACGACCAAAGTCGCAGTGCATTCGTTGCTTT 60
consensus_2325#1      ------------------------------------------------------------
                                                                                  

consensus_2325#0      CAAATTCGATCGACTTGCAGATTCGTGGCGCCGCTATTAT-TCACAATCTTGCCTGCAAG 119
consensus_2325#1      -------------------ATTTTGTAGGGCGAATTCTATATGATAAATCTTTGTTAAAT 41
                                           ** ** * **   *  *** * * **   *   *  ** 

consensus_2325#0      GAGGTAAAAACTGTGGTATTCGATGATGTTGCTGTAGAATTGACAATGGCATTGTTGCAA 179
consensus_2325#1      GATGCAAGAGTAAAATTATTGAATATATTATCTGTTGCTGCATTAAAAGA--CGATGTAA 99
                      ** * ** *       ****  **    *  **** *       **  *    * ** **

consensus_2325#0      TACTTCAATGGTAGTCCTGCTGAAGAACAGTTATATGCCTGTATGAAGTCATTGGCACGT 239
consensus_2325#1      TCCTTTTATTACATCAGGATAGAAGGGAACATATAATTATGAATTATGCTTTCG--ATAT 157
                      * ***  **   *        ****   *  ****    ** ** * *   * *  *  *

consensus_2325#0      TTTACGCAAATTAGTGGTCAAGATGTACCACAGCTTATACAAATGATTGGACCAGAACCA 299
consensus_2325#1      TGATCGTCATCCCCAAG--AAGAACAACTTCCCCTTGCACAATTT-TTGG--CAAATATG 212
                      *   **  *       *  ****   **  *  ***  **** *  ****  ** *    

consensus_2325#0      AACAAATTTCGTGGAACGTCTGAAAGAATTGACGAACAAATTGATCAGGTTAATAAGAAA 359
consensus_2325#1      TTCGAAAATCTTAGTA-GTTCAGAATGGCTNNTATACATATCGGAATGGC-AATATCAAA 270
                        * **  ** * * * **    **    *     *** ** *    **  ****  ***

consensus_2325#0      TTACGTTAAACGTAATTCAATATAATTTTATTAATAATAGAAATCGTTAAATTCCAAACG 419
consensus_2325#1      CT---CAAAATATAAGT-AACATAA---GGGTAACGACCAAAGTCGC---AGTGCATTCG 320
                       *     ***  *** * ** ****      ***  *   ** ***    * * **  **

consensus_2325#0      ATGCAATTGAAAATGATTAATTATAGTATATAATTGAATTTTTACATAGAAATTTTATTA 479
consensus_2325#1      TTGCTTTCAA-------------------------------------------------- 330
                       ***  *  *                                                  

consensus_2325#0      AAATTATCTAAATAGTGTGTTATTAAAA 507
consensus_2325#1      ----------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)