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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2369 cluster # 2369       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2369#0 length = 533 sequences # 1  
 consensus_2369#1 length = 450 sequences # 1  
consensusID : consensus_2369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence 
                              [GGTGCAGGCAAACGTGCGGCAGAGGGTGAAAAGGCGTGGATTGATACAATCCTGGCCACCTCCCTCTCCCAGATCGATACAACCCTTTTAACTATTTACTCTCTTTAATATTGCTATGTGTAAGAAAAAATAAAACAAACTGACAAGAGATGTGTCATTTATCGCGAAAGAAATAGAGAGGAGGAACGGGGATGAGAACTGGAACGAGAGTCGAAGATATACACCAAGATAATATAAATATATAAATACTGAATGACATTCGAGCGCGCGTGGCATGCATACAGAAACACAAAAAAATATGATTGCAAAAATTGAAAGAGTATATACTACACGGAACGGAGTATATAATTAAATTGTTCGATCTTCGTATTTTCATTTATTTCTTATATTTTTATTTTTCTCCCTTTTTAAACGAACGATATTTCTTAGCACAATTTTTTTTATCAAAGATAAATATTAACGCTGGGGACTGGTTAAAAGATTAAATATATTGAGACGCGACGTTGAAATTTGGATCTATTTAAGCGTTTAAA]

[+] EMBL BI505854             [GGTGCAGGCAAACGTGCGGCAGAGGGTGAAAAGGCGTGGATTGATACAATCCTGGCCACCTCCCTCTCCCAGATCGATACAACCCTTTTAACTATTTACTCTCTTTAATATTGCTATGTGTAAGAAAAAATAAAACAAACTGACAAGAGATGTGTCATTTATCGCGAAAGAAATAGAGAGGAGGAACGGGGATGAGAACTGGAACGAGAGTCGAAGATATACACCAAGATAATATAAATATATAAATACTGAATGACATTCGAGCGCGCGTGGCATGCATACAGAAACACAAAAAAATATGATTGCAAAAATTGAAAGAGTATATACTACACGGAACGGAGTATATAATTAAATTGTTCGATCTTCGTATTTTCATTTATTTCTTATATTTTTATTTTTCTCCCTTTTTAAACGAACGATATTTCTTAGCACAATTTTTTTTATCAAAGATAAATATTAACGCTGGGGACTGGTTAAAAGATTAAATATATTGAGACGCGACGTTGAAATTTGGATCTATTTAAGCGTTTAAA]




>consensus_2369#0
GGTGCAGGCAAACGTGCGGCAGAGGGTGAAAAGGCGTGGATTGATACAATCCTGGCCACC
TCCCTCTCCCAGATCGATACAACCCTTTTAACTATTTACTCTCTTTAATATTGCTATGTG
TAAGAAAAAATAAAACAAACTGACAAGAGATGTGTCATTTATCGCGAAAGAAATAGAGAG
GAGGAACGGGGATGAGAACTGGAACGAGAGTCGAAGATATACACCAAGATAATATAAATA
TATAAATACTGAATGACATTCGAGCGCGCGTGGCATGCATACAGAAACACAAAAAAATAT
GATTGCAAAAATTGAAAGAGTATATACTACACGGAACGGAGTATATAATTAAATTGTTCG
ATCTTCGTATTTTCATTTATTTCTTATATTTTTATTTTTCTCCCTTTTTAAACGAACGAT
ATTTCTTAGCACAATTTTTTTTATCAAAGATAAATATTAACGCTGGGGACTGGTTAAAAG
ATTAAATATATTGAGACGCGACGTTGAAATTTGGATCTATTTAAGCGTTTAAA

consensusID : consensus_2369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence 
                              [TAACGACGCCTGGGAGTTACCTTTTATTACAATTATTACTTCAATGTTTATTCCTTATTTTGTTATCAATAAAAATCGTTACATAGTAGTTTGGGTTGCTGCTTGACGCCAGCCGAATCGACAAGCAATCAGTTATAGTAATAATAGTAGCAATAATATTACAGTAATAATAAATGGTAGCAGTATCGTGTATTAAATGTATGTGTGTCATGTATATGGGCGTGTGTGTATGTGTGCGTGTGTGTGTGTTTATACGCGTGAACGCATCTGTATGACTGCAGGGTGTATTTCTTGATGTAACTCGTATAAGACTGCATTAATCGAATGNNNAACGTTTACACGGTCTAAAGGAATCTATTCTTTTAAACGCTTAAATAGATCCAAATTTCAACGTCGCGTCTCAATATATTTAATCTTTTAACCAGTCCCGCGTTAATATTTATCTTTGAT]

[+] EMBL BI503476             [TAACGACGCCTGGGAGTTACCTTTTATTACAATTATTACTTCAATGTTTATTCCTTATTTTGTTATCAATAAAAATCGTTACATAGTAGTTTGGGTTGCTGCTTGACGCCAGCCGAATCGACAAGCAATCAGTTATAGTAATAATAGTAGCAATAATATTACAGTAATAATAAATGGTAGCAGTATCGTGTATTAAATGTATGTGTGTCATGTATATGGGCGTGTGTGTATGTGTGCGTGTGTGTGTGTTTATACGCGTGAACGCATCTGTATGACTGCAGGGTGTATTTCTTGATGTAACTCGTATAAGACTGCATTAATCGAATGNNNAACGTTTACACGGTCTAAAGGAATCTATTCTTTTAAACGCTTAAATAGATCCAAATTTCAACGTCGCGTCTCAATATATTTAATCTTTTAACCAGTCCCGCGTTAATATTTATCTTTGAT]




>consensus_2369#1
TAACGACGCCTGGGAGTTACCTTTTATTACAATTATTACTTCAATGTTTATTCCTTATTT
TGTTATCAATAAAAATCGTTACATAGTAGTTTGGGTTGCTGCTTGACGCCAGCCGAATCG
ACAAGCAATCAGTTATAGTAATAATAGTAGCAATAATATTACAGTAATAATAAATGGTAG
CAGTATCGTGTATTAAATGTATGTGTGTCATGTATATGGGCGTGTGTGTATGTGTGCGTG
TGTGTGTGTTTATACGCGTGAACGCATCTGTATGACTGCAGGGTGTATTTCTTGATGTAA
CTCGTATAAGACTGCATTAATCGAATGNNNAACGTTTACACGGTCTAAAGGAATCTATTC
TTTTAAACGCTTAAATAGATCCAAATTTCAACGTCGCGTCTCAATATATTTAATCTTTTA
ACCAGTCCCGCGTTAATATTTATCTTTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2369#0      GGTGCAGGCAAACGTGCGGCAGAGGGTGAAAAGGCGTGGATTGATACAATCCTGGCCACC 60
consensus_2369#1      -------------------------------------------TAACGACGCCTGGGAGT 17
                                                                   ** *  *  *  *  

consensus_2369#0      TCCCTCTCCCAGATCGATACAACCCTTTTAACTATTTACTCTCTTTAATATTGCTATGTG 120
consensus_2369#1      TACCTTTT----ATTACAATTATTACTTCAA-TGTTTATTCCTT---ATTTTGTTATCAA 69
                      * *** *     **    *  *    ** ** * **** **  *   ** *** ***   

consensus_2369#0      TAAGAAAAAATAAAACAAACTGACAAGAGATGTGTCATTTATCGCGAAAGAAATAGAGAG 180
consensus_2369#1      TAAAAATCGTTACATAGTAGTTTGGGTTGCTGCTTGACGCCAGCCGAATCGACAAGCAAT 129
                      *** **    ** *    * *       * **  * *       ****   *  **  * 

consensus_2369#0      GAGGAACGGGGATGAGAACTGGAACGAGAGTCGAAGATATACACCAAGATAATATAAATA 240
consensus_2369#1      CAGTTATAGTAATAATAGTAGCAATAATA-TTACAGTAATAATAAATGGTAGCAGTATCG 188
                       **  *  *  ** * *   * **  * * *   **  ***    * * **  *  *   

consensus_2369#0      TATAAATACTGAATGACATTCGAGCGCGCGTGGCATGCATACAGAAACACAAAAAAATAT 300
consensus_2369#1      TGTATTAAATGTATGTGTGTCATGTATATG-GGCGTGTGTGTATGTGTGCGTGTGTGTGT 247
                      * **   * ** ***    **  *     * *** **  *  *      *       * *

consensus_2369#0      GATTGCAAAAATTGAAAGAGTATATACTACACGGAACGGAGTATATAATTAAATTGTTCG 360
consensus_2369#1      GTTTATACGCGT-GAACGCATCTGTATGACT----GCAGGGTGTATTTCTTGAT-----G 297
                      * **  *    * *** *  * * **  **      * * ** ***   *  **     *

consensus_2369#0      ATCTTCGTATTTTCATTTATTTCTTATATTTTTATTTTTCTCCCTTTTTAAACGAACGAT 420
consensus_2369#1      TAACTCGTATAAGACTGCATTAATCGAATGNNNAACGTTTACACGGTCTAAAGGAATC-T 356
                          ******     *  ***  *   **    *   **  * *  * **** ***   *

consensus_2369#0      ATTTCTTAGCACAATTTTTTTTATCAAAGATAAATATTAACGCTGGGGACTGGTTAAAAG 480
consensus_2369#1      ATTCTTTTAAACG-----CTTAAATAGATCCAAATTTCAACGTCGCGTC----TCAATAT 407
                      ***  **   **       ** *  * *   **** * ****  * *      * ** * 

consensus_2369#0      ATTAAATATATTGA--GACGCGACGTTGAAATTTGGATCTATTTAAGCGTTTAAA 533
consensus_2369#1      ATTTAATCTTTTAACCAGTCCCGCGTTAATATTTATCTTTGAT------------ 450
                      *** *** * ** *      *  **** * ****   * *  *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)