cluster # 237

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Apis mellifera
cluster # 237 cluster # 237 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_237#0 length = 620 sequences # 1
consensus_237#1 length = 617 sequences # 1

consensus_237#2 length = 615 sequences # 2
consensus_237#3 length = 503 sequences # 1

consensusID : consensus_237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGTGATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAGTGCAATCCAAGTCAATCATCTCAAACAAAAGGCCTATATATACCAATCTGTATATCCACACATTGTGTATCTATTAATATTTAACGTCACGTGTATATGATGCCGTAAGACTTGCACTTGTCTGTACTTGTATTTATTATTACGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGTGCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACAGTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATGTTAATATTATATATACATATATATGTATATGTGTATATGTGTAT]

[+] EMBL BI504325             [CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGTGATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAGTGCAATCCAAGTCAATCATCTCAAACAAAAGGCCTATATATACCAATCTGTATATCCACACATTGTGTATCTATTAATATTTAACGTCACGTGTATATGATGCCGTAAGACTTGCACTTGTCTGTACTTGTATTTATTATTACGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGTGCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACAGTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATGTTAATATTATATATACATATATATGTATATGTGTATATGTGTAT]




>consensus_237#0
CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGT
GTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGA
AAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAG
CGGAGAAAATGCAACAGATGAGCCGACAAATGTGATGGTCAACATCTTTCTCCGCTCTAT
CAGCAAAATAAATGATTATAACATGGTGAGTGCAATCCAAGTCAATCATCTCAAACAAAA
GGCCTATATATACCAATCTGTATATCCACACATTGTGTATCTATTAATATTTAACGTCAC
GTGTATATGATGCCGTAAGACTTGCACTTGTCTGTACTTGTATTTATTATTACGTGTGAT
GTGTATGTATATTTATATACGTATGCTGGAGGAGGTGCTTCGCATATATATACATACGTA
TATAAATATATACATGATGGATAAGCCGCGCTAACAGTTGGATGTGTGCTATCAGTCGCA
CCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATGTTAATATTATATATACATATATAT
GTATATGTGTATATGTGTAT

consensusID : consensus_237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCCGCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA]

[+] EMBL BI506862             [AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCCGCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA]




>consensus_237#1
AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGG
AAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGA
CGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAA
CCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCCGCGGTTGTC
CGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATGGAATATTCT
GTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGA
GGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTC
TTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGT
ATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCG
ATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTAT
GGTTGGACAACAGATGA

consensusID : consensus_237#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 615
fasta sequence

                              [ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA]

[+] EMBL BI506663             [ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGATTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATG ]
[+] EMBL BI509808             [                             ATTATCAGCTTCTCCAGGCTGCCGCAATGTGGCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTACGCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGATGAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGGTTGGACAACAGATGA]




>consensus_237#2
ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTG
GCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC
GCAGGGAAAGGTGAATTACCGGGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGGAGG
ATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGTCCG
GGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGGAATATTCTGT
ACAGTTAACATTCCGGGAACAATGGCTGGATGAACGATTACGATTTAATGATTTTGGAGG
TCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATGCCAGATCTGTTCTT
TTCGAATGAGAAAGAAGGACATTTTCACAATATTATTATGCCGAATGTGTACATTCGTAT
TTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATCCTTAACATTATCATGTCCGAT
GAATTTAAAATTGTACCCCTTGGATCGACAAGTTTGCTCATTGCGTATGGCAAGTTATGG
TTGGACAACAGATGA

consensusID : consensus_237#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [ACCATAGTAACGTCATCTATTTTTGAGATACTTCGAACAAATATGTTGACGCGGACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAATCGTTGAATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGATTTTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTGTTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTTTTTGTTTTCTTAAATAAATTTTCACTTTCATTCAAAAAAATTAGATCCTTTAGNGAAAGGGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAATAATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATCGTTAAAGAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA]

[+] EMBL BI502837             [ACCATAGTAACGTCATCTATTTTTGAGATACTTCGAACAAATATGTTGACGCGGACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAATCGTTGAATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGATTTTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTGTTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTTTTTGTTTTCTTAAATAAATTTTCACTTTCATTCAAAAAAATTAGATCCTTTAGNGAAAGGGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAATAATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATCGTTAAAGAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA]




>consensus_237#3
ACCATAGTAACGTCATCTATTTTTGAGATACTTCGAACAAATATGTTGACGCGGACAACC
GCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAATCGTTGAATAATATG
AAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGATTTTTGTTGAA
ACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTGTTTTTTCGCTCGTTTCAAGTT
CCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTTTTTGTTTTCTTAAATAAATTTTC
ACTTTCATTCAAAAAAATTAGATCCTTTAGNGAAAGGGTGGATGGAAATCGTCGCTGAAA
TAAATACGATATACATACGTGAGATTTATAATAATTCGTATATTTATGTTCTCTGAATTA
AAAAAAAAAAAAGAAAGAAAGAAAGAAAGATCGTTAAAGAAAAATCGAAAAAAAAGAGNA
AATTCTAAATCTTGAGAATGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_237#1      ------------------------------------------------------------
consensus_237#2      ATTGCATCACGGAACGCTCATTGCCTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTG 60
consensus_237#0      ------------------------CTAGGATTATCAGCTTCTCCAGGCTGCCGCAATGTG 36
consensus_237#3      ------------------------------------------------------------
                                                                                 

consensus_237#1      ------AGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 54
consensus_237#2      GCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 120
consensus_237#0      GCCTGGAGTATTGAAGTTATTGGTGTTATTAACATTCTTGCTACATCCATCAAGATGTAC 96
consensus_237#3      ----ACCATAGTAACGTCATC--TATTTTTGAGATACTTCGAACAAATATGTTGACGCGG 54
                             ** * * ** **   * ** ** * ** ***   ***   **   ** *   

consensus_237#1      GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 111
consensus_237#2      GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 177
consensus_237#0      GCAGGGAAAGGTGAAT-TACCG--GGAAAAGGAGAAAGAAGTATTAGACAACATTTTAGG 153
consensus_237#3      ACAACCGCGGGCCCATCTAACATAGCAAACAGAATAAATAAAATTAATCAA--TCGTTGA 112
                      **      **   ** ** *   * ***  **  **  *  ****  ***  *  * * 

consensus_237#1      AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGT 171
consensus_237#2      AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGGGCCGGCCATTGT 237
consensus_237#0      AGGATACGACGCGCGTATCCGGCCCAGCGGAGAAAATGCAACAGATGAGCCGACAAATGT 213
consensus_237#3      ATAATATGAAACGCATCGAGGGGTTTGTAAATGAGAAAAAAAAGAAACGCTTCTCGAT-T 171
                     *  *** **  *** *    **    *   *  * *   ** ***   **       * *

consensus_237#1      CCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATGATGGGCCC 231
consensus_237#2      CCGGGTAAACCTGTTTGTGCGAAGCATTGCGACAATTAGTGACATCAAGATG-------- 289
consensus_237#0      GATGGTCAACATCTTTCTCCGCTCTATCAGCAAAATAAATGATTATAACATGGTGAG--- 270
consensus_237#3      TTTGTTGAAACAAAGAATACAATTTCTTTTTTTCTTTTTTTTTTTCTG------------ 219
                        * * **        * *      *        *   *                    

consensus_237#1      GCGGTTGTCCGCGTCAACATATTTGTTCGAAGTATCTCAAAAATAGATGACGTTACTATG 291
consensus_237#2      ------------------------------------------------------------
consensus_237#0      -----------------------------------------------TGCAATCCAAGTC 283
consensus_237#3      ------------------------------------------------------------
                                                                                 

consensus_237#1      GAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGG-ATGAACG-ATTACG-ATTT 348
consensus_237#2      GAATATTCTGTACAGTTAACATTCCGGGAACAATGGCTGG-ATGAACG-ATTACG-ATTT 346
consensus_237#0      AATCATCTCAAACAAAAGGCCTATATATACCAATCTGTAT-ATCCACACATTGTGTATCT 342
consensus_237#3      --TTTTTTCGCTCGTTTCAAGTTCCTGAAATGAAATGTATTATTTTTTTTCTCTTTTCTT 277
                          *      *        *      *   *    *   **        *       *

consensus_237#1      AATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATG 408
consensus_237#2      AATGATTTTGGAGGTCGTCTAAAATATTTAACATTAACGGATGCGAGTCGTGTTTGGATG 406
consensus_237#0      ATTAATATTTAACGTCACGT---GTATATGATGCCGTAAGACTTGCACT-TGTCTGTAC- 397
consensus_237#3      TTTGTTTTCTTAAATAAATTTTCAC-TTTCATTCAAAAAAATTAGATCCTTTAGNGAAAG 336
                       *  * *   *  *    *      * * *         *   *     *    * *  

consensus_237#1      CCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTA-------T 461
consensus_237#2      CCAGATCTGTTCTTTTCGAATGAGAAAGAAGGACATTTTCACAATATTATTA-------T 459
consensus_237#0      TTGTATTTATTATTA-CGTGTGATGTGTATGTATATTTATATACGTATGCTGGAGGAGGT 456
consensus_237#3      GGTGGATGGAAATCGTCGCTGAAATAAATACGATATACATACGTGAGATTTATAA----T 392
                                 *   **    *         * **    *         *        *

consensus_237#1      GCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATC 521
consensus_237#2      GCCGAATGTGTACATTCGTATTTTTCCCAATGGTTCCGTTCTATACAGTATACGGATATC 519
consensus_237#0      GCTTCGCATATATATACATACGTATATAAATATATACATGATGGATAAGCCGCGCTAACA 516
consensus_237#3      AATTCGTATATTTATGTTCTCTGAATTAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGATC 452
                             * *  **             **                *          *  

consensus_237#1      CTTAACATTATCATGTCCGATGAATTTAA--AATTGTACCCCTTGG-ATCGACAAGTTTG 578
consensus_237#2      CTTAACATTATCATGTCCGATGAATTTAA--AATTGTACCCCTTGG-ATCGACAAGTTTG 576
consensus_237#0      GTTGGATGTGTGCTATCAGTCGCACCTCGTTGATTTTTCTCGATGTCGTTGACTGTCATG 576
consensus_237#3      GTTAAA---GAAAAATCGAAAAAAAAGAGNAAATTCTAAATCTTGAGAATGATA------ 503
                      **            **      *        *** *      **     **        

consensus_237#1      CTCATTGCGTATGGCAAGTTATGGTTGGACA-ACAGATGA---- 617
consensus_237#2      CTCATTGCGTATGGCAAGTTATGGTTGGACA-ACAGATGA---- 615
consensus_237#0      TTAATATTATATATACATATATATGTATATGTGTATATGTGTAT 620
consensus_237#3      --------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)