cluster # 2498

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Apis mellifera
cluster # 2498 cluster # 2498 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2498#0 length = 358 sequences # 1

consensus_2498#1 length = 183 sequences # 1

consensusID : consensus_2498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [GGTACGAGAGTGAACGACGGCGGACGGTTGTTGTTGGTGTTGAGCCTGGTGGTGATCGGCACGCTGTTCAGCCACAGGATCGCGACCCGCGCGTACGACGAGGTACCGGAGATATTCGATCCGAAAGGGTTCGTCTAGCTCGTCGAGCGACGGCCGAGTCTCCGGACCACCGTCGAGGGAAGCCGCGGGGGAAGCCAATGGAACGCAGAAGCCACGGGCCGGAGAAGAAACGATCCACGACCGCGCGTCACCGGCGAGTCGTCGCCGACAAGCGAAACAAACATATCATCAACGATGGGATGACGGAGAACAGTCGATCGATCTGACGAGTCGGTCGCGCTTCGGCAGTGAGAGAGAG]

[+] EMBL BI514418             [GGTACGAGAGTGAACGACGGCGGACGGTTGTTGTTGGTGTTGAGCCTGGTGGTGATCGGCACGCTGTTCAGCCACAGGATCGCGACCCGCGCGTACGACGAGGTACCGGAGATATTCGATCCGAAAGGGTTCGTCTAGCTCGTCGAGCGACGGCCGAGTCTCCGGACCACCGTCGAGGGAAGCCGCGGGGGAAGCCAATGGAACGCAGAAGCCACGGGCCGGAGAAGAAACGATCCACGACCGCGCGTCACCGGCGAGTCGTCGCCGACAAGCGAAACAAACATATCATCAACGATGGGATGACGGAGAACAGTCGATCGATCTGACGAGTCGGTCGCGCTTCGGCAGTGAGAGAGAG]




>consensus_2498#0
GGTACGAGAGTGAACGACGGCGGACGGTTGTTGTTGGTGTTGAGCCTGGTGGTGATCGGC
ACGCTGTTCAGCCACAGGATCGCGACCCGCGCGTACGACGAGGTACCGGAGATATTCGAT
CCGAAAGGGTTCGTCTAGCTCGTCGAGCGACGGCCGAGTCTCCGGACCACCGTCGAGGGA
AGCCGCGGGGGAAGCCAATGGAACGCAGAAGCCACGGGCCGGAGAAGAAACGATCCACGA
CCGCGCGTCACCGGCGAGTCGTCGCCGACAAGCGAAACAAACATATCATCAACGATGGGA
TGACGGAGAACAGTCGATCGATCTGACGAGTCGGTCGCGCTTCGGCAGTGAGAGAGAG

consensusID : consensus_2498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [GTCGCGCTTCGGCAGTGAGAGAGAGAAAAAAAGAAAATTGCAATTGACGGATTGCGTTCGGTGACGGAGGGGGGGGGGGGGGTATAGGCTGGATGTGGACGAAGAACCAAAAACCATTCCAAAAATAGTTTCCTTGAAATCGAAGTTTTTTTCTTTCGTTTCTTCCTTTCCAATTATTTTTAT]

[+] EMBL BI512506             [GTCGCGCTTCGGCAGTGAGAGAGAGAAAAAAAGAAAATTGCAATTGACGGATTGCGTTCGGTGACGGAGGGGGGGGGGGGGGTATAGGCTGGATGTGGACGAAGAACCAAAAACCATTCCAAAAATAGTTTCCTTGAAATCGAAGTTTTTTTCTTTCGTTTCTTCCTTTCCAATTATTTTTAT]




>consensus_2498#1
GTCGCGCTTCGGCAGTGAGAGAGAGAAAAAAAGAAAATTGCAATTGACGGATTGCGTTCG
GTGACGGAGGGGGGGGGGGGGGTATAGGCTGGATGTGGACGAAGAACCAAAAACCATTCC
AAAAATAGTTTCCTTGAAATCGAAGTTTTTTTCTTTCGTTTCTTCCTTTCCAATTATTTT
TAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2498#0      GGTACGAGAGTGAACGACGGCGGACGGTTGTTGTTGGTGTTGAGCCTGGTGGTGATCGGC 60
consensus_2498#1      ------------------------------------------------------------
                                                                                  

consensus_2498#0      ACGCTGTTCAGCCACAGGATCGCGACCCGCGCGTACGACGAGGTACCGGAGATATTCGAT 120
consensus_2498#1      ------------------GTCGCGCTTCGGCAGTGAGAGAGAGAAAAAAAGAAAATTGCA 42
                                         *****   **   **  **    * *    *** * * *  

consensus_2498#0      CCGAAAGGGTTCGTCTAGCTCGTCGAGCGACGGCCGAGTCTCCGGACCACCGTCGAGGGA 180
consensus_2498#1      ATTGACGGATTGCGTTCGGTGACGGAGGGGGGGGGGGGGGTATAGGCTGGATGTGGACGA 102
                          * ** **    * * *    *** *  **  * *  *   * *       *   **

consensus_2498#0      AGCCGCGGGGGAAGCCAATGGAACGCAGAAGCCACGGGCCGGAGAAGAAACGATCCACGA 240
consensus_2498#1      AGAACCA---AAAACCATTCCAAA--AATAGTTTC--CTTGAAATCGAAGTTTTTTTCTT 155
                      **   *     ** *** *  **   *  **   *     * *   ***    *   *  

consensus_2498#0      CCGCGCGTCACCGGCGAGTCGTCGCCGACAAGCGAAACAAACATATCATCAACGATGGGA 300
consensus_2498#1      TCGTTTCTTCCTTTCCAATTATTTTTAT-------------------------------- 183
                       **    *  *   * * *  *                                      

consensus_2498#0      TGACGGAGAACAGTCGATCGATCTGACGAGTCGGTCGCGCTTCGGCAGTGAGAGAGAG 358
consensus_2498#1      ----------------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)