cluster # 2520

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Apis mellifera
cluster # 2520 cluster # 2520 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2520#0 length = 516 sequences # 1

consensus_2520#1 length = 423 sequences # 1

consensusID : consensus_2520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTAATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTCCCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTCACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCTTCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCCACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATTAATAAGTTTTAAGTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAGAATCGGTGTTTCTTTTTATTCTGAAATTTTTCTGTTAAACATCCTGTTATCTGTTAGAAAGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA]

[+] EMBL BI503147             [GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTAATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTCCCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTCACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCTTCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCCACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATTAATAAGTTTTAAGTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAGAATCGGTGTTTCTTTTTATTCTGAAATTTTTCTGTTAAACATCCTGTTATCTGTTAGAAAGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA]




>consensus_2520#0
GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTA
ATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTC
CCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTC
ACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCT
TCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCC
ACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATTAATAAGTTTTAAG
TAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAGA
ATCGGTGTTTCTTTTTATTCTGAAATTTTTCTGTTAAACATCCTGTTATCTGTTAGAAAG
GAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA

consensusID : consensus_2520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TGGGACTGTACAGGTGGTCAGTTGTCCCGGCCCGCATCGTGCAGGACAGGTGAGGGCCAATGAGATAAATTCGATCTTACCCTCATGACCAAAAGGGTACAATAAAACGTGTAATTATGCAAATATCTATTCGTATTCTGAGTATTCATTTTCTTTGAAACTCTCCCAAGAACTTACGGAAGAAAATACGCCTGACCACTAATAACAAGACGAGTATCCCCCATAAATCAAACATATCACGTCCATATTTTCCTTTCAAAAATGAAACAATTCAACGTATCTCGACCAAAAAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGAAATCCGAATCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTTTCTAACAGATAACAGGATGTTT]

[+] EMBL BI503728             [TGGGACTGTACAGGTGGTCAGTTGTCCCGGCCCGCATCGTGCAGGACAGGTGAGGGCCAATGAGATAAATTCGATCTTACCCTCATGACCAAAAGGGTACAATAAAACGTGTAATTATGCAAATATCTATTCGTATTCTGAGTATTCATTTTCTTTGAAACTCTCCCAAGAACTTACGGAAGAAAATACGCCTGACCACTAATAACAAGACGAGTATCCCCCATAAATCAAACATATCACGTCCATATTTTCCTTTCAAAAATGAAACAATTCAACGTATCTCGACCAAAAAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGAAATCCGAATCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTTTCTAACAGATAACAGGATGTTT]




>consensus_2520#1
TGGGACTGTACAGGTGGTCAGTTGTCCCGGCCCGCATCGTGCAGGACAGGTGAGGGCCAA
TGAGATAAATTCGATCTTACCCTCATGACCAAAAGGGTACAATAAAACGTGTAATTATGC
AAATATCTATTCGTATTCTGAGTATTCATTTTCTTTGAAACTCTCCCAAGAACTTACGGA
AGAAAATACGCCTGACCACTAATAACAAGACGAGTATCCCCCATAAATCAAACATATCAC
GTCCATATTTTCCTTTCAAAAATGAAACAATTCAACGTATCTCGACCAAAAAGTAATTTA
TATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGAAATCCGAATCTTCAAAT
TTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTTTCTAACAGATAACAGGATG
TTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2520#0      GAAAGTACGTGAACCTTGCGAAATTTTCGTTTACACAGCCGCCCGTATATCAAAAGTTTA 60
consensus_2520#1      ---------------------------------------TGGGACTGTA-CAGGTGGTCA 20
                                                              *    * ** **   * * *

consensus_2520#0      ATTGAATTTTCGGCCGAGGCCTTGGCCCGGGGAGATTAGGATCGTGGCCGGCCTCTTCTC 120
consensus_2520#1      GTTG---TCCCGGCCC--GCATCGTGCAGGACAGGTGAGGGCCAATGA-GATAAATTCGA 74
                       ***   *  *****   ** * *  * **  ** * ***  *   *  *     ***  

consensus_2520#0      CCCCCCCTGCCTCGTGTCTCTTTCCACCTACGACGACCCTGGCCGTCTTCCTGATACCTC 180
consensus_2520#1      TCTTAC---CCTCATGACCAAAA--GGGTACAATAAAACGTGTAATTATGCAAATATCTA 129
                       *   *   **** ** *          *** *  *  *  *   *  * *  *** ** 

consensus_2520#0      ACGTCCTCTTTATCTGTGTACTACAACCGTCCTTACGCGATTATTATTCTAGCTGCCCCT 240
consensus_2520#1      -----TTCGTATTCTGAGTATT-----CATTTTCT-----TTGAAACTCTCCCAAGAACT 174
                            ** *  **** *** *     * *  *       **   * ***  *     **

consensus_2520#0      TCCACCTTTGATTATCATCCGATTGTGAGATAGAGAAGGAAGCGTCTTCAATTTGATTCC 300
consensus_2520#1      TACGGAAGAAAATA-CGCCTGACCACTA-ATAACAAGACGAGTATCCCCCAT--AAATCA 230
                      * *       * ** *  * **     * ***   *    **  **  * **   * ** 

consensus_2520#0      ACGAGAGATTATTTTCTTTTTTTTAGGTATGTTGAGATTTGGTAATT-AATAAGTTTTAA 359
consensus_2520#1      A--ACATATCACGTCCATATTTTC---CTTTCAAAAATGAAACAATTCAACGTATCTCGA 285
                      *  * * ** *  * * * ****      *    * **     **** **    * *  *

consensus_2520#0      GTAGTTTTAGTTAATTCTGTATTTTTGTATTTTTAAGAAAGGGGCGACGAAGATACGAAG 419
consensus_2520#1      CCAAA--AAGTAATTTATATACACCTATATCGTTCCACCTGGAATTTCCTTCCTCAAAGA 343
                        *     *** * ** * **    * ***  **      **     *     *   *  

consensus_2520#0      AATCGGTGTTTCTTTTTATTCTGAAATTTT-TCTGTTAAACATCCTGTTATCTGTTAGAA 478
consensus_2520#1      AATCCGAA--TCTTCAAATTTTTATTTCTCGTTTAAAAAATATACCCTCTTCCCTTCCTT 401
                      **** *    ****   *** * *  * *  * *   *** ** *  *  **  **    

consensus_2520#0      AGGAAGGGAAGAGGGTATATTTTTTAAACGAGAAATAA 516
consensus_2520#1      TCTAACAGATAACAGGATGTTT---------------- 423
                         **  **  *  * ** ***

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)