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Apis mellifera
cluster # 2526 cluster # 2526       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2526#0 length = 522 sequences # 1  
 consensus_2526#1 length = 211 sequences # 1  
consensusID : consensus_2526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence 
                              [GGAAAAAAAATAGTCTTCTCAGTTCCCGCCGCGTCTGGCAGGATTCGAAATTCTTAAAAACGGTTCGCGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCGCGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGATGGTCGGTCGGTGCGTTATAATAGGGGAGAAAAAAGAAAAAGATGGTTTCGAAAACGATTTGGACTATTTTCAAGGTGATAGGATCAAAGATTGAACGATTGTAAAGAATAATCTAATATTTAAACTAACTATACAGTATAATAACTATATTCCTAATTTTAGAAATTCGAAACGTTTCTCTGTGATCAGAAATGATCATATTTGAAACGGGATAAAAATAATAATTTCGATTGCACAAGTCACGATACGCCATGTGATTCAAATAAAATTCATCGTCAAATTTTTCATAAAGAGAGAGCATTATAAATATTTTGCGAAATGAAATTTCATTAAAAAAAAAA]

[+] EMBL BI505545             [GGAAAAAAAATAGTCTTCTCAGTTCCCGCCGCGTCTGGCAGGATTCGAAATTCTTAAAAACGGTTCGCGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCGCGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGATGGTCGGTCGGTGCGTTATAATAGGGGAGAAAAAAGAAAAAGATGGTTTCGAAAACGATTTGGACTATTTTCAAGGTGATAGGATCAAAGATTGAACGATTGTAAAGAATAATCTAATATTTAAACTAACTATACAGTATAATAACTATATTCCTAATTTTAGAAATTCGAAACGTTTCTCTGTGATCAGAAATGATCATATTTGAAACGGGATAAAAATAATAATTTCGATTGCACAAGTCACGATACGCCATGTGATTCAAATAAAATTCATCGTCAAATTTTTCATAAAGAGAGAGCATTATAAATATTTTGCGAAATGAAATTTCATTAAAAAAAAAA]




>consensus_2526#0
GGAAAAAAAATAGTCTTCTCAGTTCCCGCCGCGTCTGGCAGGATTCGAAATTCTTAAAAA
CGGTTCGCGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCG
CGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGA
TGGTCGGTCGGTGCGTTATAATAGGGGAGAAAAAAGAAAAAGATGGTTTCGAAAACGATT
TGGACTATTTTCAAGGTGATAGGATCAAAGATTGAACGATTGTAAAGAATAATCTAATAT
TTAAACTAACTATACAGTATAATAACTATATTCCTAATTTTAGAAATTCGAAACGTTTCT
CTGTGATCAGAAATGATCATATTTGAAACGGGATAAAAATAATAATTTCGATTGCACAAG
TCACGATACGCCATGTGATTCAAATAAAATTCATCGTCAAATTTTTCATAAAGAGAGAGC
ATTATAAATATTTTGCGAAATGAAATTTCATTAAAAAAAAAA

consensusID : consensus_2526#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence 
                              [CGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCGCGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGATGGTCGGTCGGTCGGTCGGTCGTCTCGCGGCCCGAAAACAACCCCTGCTCCAGCAAACCCACCCCGCGACATTTGTCCCTCCACCCACCCCCAAAACT]

[+] EMBL BI503141             [CGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCGCGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGATGGTCGGTCGGTCGGTCGGTCGTCTCGCGGCCCGAAAACAACCCCTGCTCCAGCAAACCCACCCCGCGACATTTGTCCCTCCACCCACCCCCAAAACT]




>consensus_2526#1
CGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCGCGATTAG
GGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGATGGTCGG
TCGGTCGGTCGGTCGTCTCGCGGCCCGAAAACAACCCCTGCTCCAGCAAACCCACCCCGC
GACATTTGTCCCTCCACCCACCCCCAAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2526#0      GGAAAAAAAATAGTCTTCTCAGTTCCCGCCGCGTCTGGCAGGATTCGAAATTCTTAAAAA 60
consensus_2526#1      ------------------------------------------------------------
                                                                                  

consensus_2526#0      CGGTTCGCGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCG 120
consensus_2526#1      -------CGTCCACGTTGAACGAGGACAAGGTCGAGGGTGGTGCACAAGCGAATTCGCCG 53
                             *****************************************************

consensus_2526#0      CGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGA 180
consensus_2526#1      CGATTAGGGTGCGACGTGGACGCGAAACCTGTCTTTCAAAGTCCCTCCTTGAACGCAGGA 113
                      ************************************************************

consensus_2526#0      TGGTCGGTCGGTGCGTTA-TAATAGGGGAGAAAAAAGAAAAAGATGGTTTCGAAAA---C 236
consensus_2526#1      TGGTCGGTCGGTCGGTCGGTCGTCTCGCGGCCCGAAAACAACCCCTGCTCCAGCAAACCC 173
                      ************  **   *  *   *  *    ** * **     * * *   **   *

consensus_2526#0      GATTTGGACTATTT-TCAAGGTGATAGGATCAAAGATTGAACGATTGTAAAGAATAATCT 295
consensus_2526#1      ACCCCGCGACATTTGTCCCTCCACCCACCCCCAAAACT---------------------- 211
                           *    **** **             * ** * *                      

consensus_2526#0      AATATTTAAACTAACTATACAGTATAATAACTATATTCCTAATTTTAGAAATTCGAAACG 355
consensus_2526#1      ------------------------------------------------------------
                                                                                  

consensus_2526#0      TTTCTCTGTGATCAGAAATGATCATATTTGAAACGGGATAAAAATAATAATTTCGATTGC 415
consensus_2526#1      ------------------------------------------------------------
                                                                                  

consensus_2526#0      ACAAGTCACGATACGCCATGTGATTCAAATAAAATTCATCGTCAAATTTTTCATAAAGAG 475
consensus_2526#1      ------------------------------------------------------------
                                                                                  

consensus_2526#0      AGAGCATTATAAATATTTTGCGAAATGAAATTTCATTAAAAAAAAAA 522
consensus_2526#1      -----------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)