cluster # 2537

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Apis mellifera
cluster # 2537 cluster # 2537 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2537#0 length = 522 sequences # 1

consensus_2537#1 length = 306 sequences # 1

consensusID : consensus_2537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TGGCAGCAGCTGCTTCAAAACCTCAAGCTACATTAAAGGCACCTCCAAAACCACCAGCTCCAAAGCCAGTACCTGTTCCCACACAACCACCACCACCTCCTACTATGAGTATGCCTACTATGGGAATTCCTCAACCAATGATGCCGCAAGCACCGATGATGATGATGGCTCCTATGCCTCCGATTCGACCACCACCGCTTATGACACCAGCAATGTCGCCGTTTATGCCAACACCACCACCTATGCAACCACCAATGACATCTGCTATTGGATTAAAACATGCTACTGAACCTATGGAAGAAGAACCTCAAACTAAGAAACTTAGAACTGAAGATTCATTGATACCAGAACAACAATTTTTGGCTAGAAACAAGGGTCCTGTACAATTAAATATTGCTGCACCAATGATGACAGAAAAAGCAGAATGGAAATTAAATGGCCAAACATTAAATATTACTTTGCAATTAAGTGATACTGTAGCAACAATGAAAGCTCTTATTCATGAACAAACTGGCATGCCTC]

[+] EMBL BI515778             [TGGCAGCAGCTGCTTCAAAACCTCAAGCTACATTAAAGGCACCTCCAAAACCACCAGCTCCAAAGCCAGTACCTGTTCCCACACAACCACCACCACCTCCTACTATGAGTATGCCTACTATGGGAATTCCTCAACCAATGATGCCGCAAGCACCGATGATGATGATGGCTCCTATGCCTCCGATTCGACCACCACCGCTTATGACACCAGCAATGTCGCCGTTTATGCCAACACCACCACCTATGCAACCACCAATGACATCTGCTATTGGATTAAAACATGCTACTGAACCTATGGAAGAAGAACCTCAAACTAAGAAACTTAGAACTGAAGATTCATTGATACCAGAACAACAATTTTTGGCTAGAAACAAGGGTCCTGTACAATTAAATATTGCTGCACCAATGATGACAGAAAAAGCAGAATGGAAATTAAATGGCCAAACATTAAATATTACTTTGCAATTAAGTGATACTGTAGCAACAATGAAAGCTCTTATTCATGAACAAACTGGCATGCCTC]




>consensus_2537#0
TGGCAGCAGCTGCTTCAAAACCTCAAGCTACATTAAAGGCACCTCCAAAACCACCAGCTC
CAAAGCCAGTACCTGTTCCCACACAACCACCACCACCTCCTACTATGAGTATGCCTACTA
TGGGAATTCCTCAACCAATGATGCCGCAAGCACCGATGATGATGATGGCTCCTATGCCTC
CGATTCGACCACCACCGCTTATGACACCAGCAATGTCGCCGTTTATGCCAACACCACCAC
CTATGCAACCACCAATGACATCTGCTATTGGATTAAAACATGCTACTGAACCTATGGAAG
AAGAACCTCAAACTAAGAAACTTAGAACTGAAGATTCATTGATACCAGAACAACAATTTT
TGGCTAGAAACAAGGGTCCTGTACAATTAAATATTGCTGCACCAATGATGACAGAAAAAG
CAGAATGGAAATTAAATGGCCAAACATTAAATATTACTTTGCAATTAAGTGATACTGTAG
CAACAATGAAAGCTCTTATTCATGAACAAACTGGCATGCCTC

consensusID : consensus_2537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [AAACAACTTGCTGAAAGGCGTACCGATATTTTCGGCGTCGGCGATGAAGAAACTGCTATTGGTAAAAAGATCGGAGAAGAAGATAAAAAGAAAGATGACAAAGTTACATGGGATGGACATACATCAAGTGTTGAAGCAGCAACTAGAGCAGCTAGAGCAAATATTACTTTGGAAGAACAAATTCACCAAATACATAAAGTTAAAGGACTTCTTCCAGATGAAGAAAAAGAAAAAATTGGTCCAAAACCTGCTAATCGCGCAGCTGAGTTGTCGCACATGGCAGCAGCTGCTTCAAAACCTCAAGCT]

[+] EMBL BI516658             [AAACAACTTGCTGAAAGGCGTACCGATATTTTCGGCGTCGGCGATGAAGAAACTGCTATTGGTAAAAAGATCGGAGAAGAAGATAAAAAGAAAGATGACAAAGTTACATGGGATGGACATACATCAAGTGTTGAAGCAGCAACTAGAGCAGCTAGAGCAAATATTACTTTGGAAGAACAAATTCACCAAATACATAAAGTTAAAGGACTTCTTCCAGATGAAGAAAAAGAAAAAATTGGTCCAAAACCTGCTAATCGCGCAGCTGAGTTGTCGCACATGGCAGCAGCTGCTTCAAAACCTCAAGCT]




>consensus_2537#1
AAACAACTTGCTGAAAGGCGTACCGATATTTTCGGCGTCGGCGATGAAGAAACTGCTATT
GGTAAAAAGATCGGAGAAGAAGATAAAAAGAAAGATGACAAAGTTACATGGGATGGACAT
ACATCAAGTGTTGAAGCAGCAACTAGAGCAGCTAGAGCAAATATTACTTTGGAAGAACAA
ATTCACCAAATACATAAAGTTAAAGGACTTCTTCCAGATGAAGAAAAAGAAAAAATTGGT
CCAAAACCTGCTAATCGCGCAGCTGAGTTGTCGCACATGGCAGCAGCTGCTTCAAAACCT
CAAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2537#0      TGGCAGCAGCTGCTTCAAAACCTCAAGCTACATTAAAGGCACCTCCAAAACCACCAGCTC 60
consensus_2537#1      ------------------------------------------------------------
                                                                                  

consensus_2537#0      CAAAGCCAGTACCTGTTCCCACACAACCACCACCACCTCCTACTATGAGTATGCCTACTA 120
consensus_2537#1      ------------------------------------------------------------
                                                                                  

consensus_2537#0      TGGGAATTCCTCAACCAATGATGCCGCAAGCACCGATGATGATGATGGCTCCTATGCCTC 180
consensus_2537#1      ------------------------------------------------------------
                                                                                  

consensus_2537#0      CGATTCGACCACCACCGCTTATGACACCAGCAATGTCGCCGTTTATGCCAACACCACCAC 240
consensus_2537#1      -----------AAACAACTTGCTGAA--AGGCGTACCGATATTT---TCGGCGTCGGCGA 44
                                   **  ***     *  **   *  **   ***    *  *  *  *  

consensus_2537#0      CTATGCAACCACCAATGACATCTGCTATTGGATTAAAACATGCTACTGAACCTATGGAAG 300
consensus_2537#1      TGAAGAAACTGCTATTGGTAAAAAG-ATCGGAGAAGAAGATAAAAAGAAAG--ATGACAA 101
                        * * ***  * * **  *      ** ***  * ** **   *   **   ***  * 

consensus_2537#0      AAGAACCTCAAACTAAGAAACTT--AGAACTGAAGATTCATTGATACCAGA-ACAACAAT 357
consensus_2537#1      AGTTACATGGGATGGACATACATCAAGTGTTGAAGCAGCAACTAGAGCAGCTAGAGCAAA 161
                      *   ** *   *   * * ** *  **   *****   **   * * ***  * * *** 

consensus_2537#0      TTTTGGCTAGAAACAAGGGTCCTGTACAATTAAATATTGCTGCACCAATGATGACAGAAA 417
consensus_2537#1      TATTACTTTGGAAGAACAAATTCAC-CAAATACATAAAGTTAAAGGACTTCTTCCAGATG 220
                      * **   * * ** **          *** ** ***  * *  *  * *  *  ****  

consensus_2537#0      AAGCAGAATGGAAATTAAATGGCCAAACATTAAATATTACTTTGCAATTAAGTGATACTG 477
consensus_2537#1      AAGAAAAAGAAAAA---ATTGGTCCAAAACCTGCTA--ATCGCGCAGCTGAGTTGTCGCA 275
                      *** * **   ***   * *** * ** *     **  *    ***  * ***  *    

consensus_2537#0      TAGCAACAATGAAAGCTCTTATTCATGAACAAACTGGCATGCCTC 522
consensus_2537#1      CA-TGGCAGCAGCTGCTTCAAAACCT---CAAGCT---------- 306
                       *    **      ***   *  * *   *** **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)