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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2604 cluster # 2604       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2604#0 length = 518 sequences # 1  
 consensus_2604#1 length = 240 sequences # 1  
consensusID : consensus_2604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence 
                              [TAATGGCATAGAATATGATTATGTGTTTTCAGTGGATATACAAGATGGTATTCCTCCATTAAAATTACCTTATAATAATGATCAGGATCCTTGGCATGTTGCCCAGAAGTTCCTTCATGATAATGGTCTTAGTCAATTGTTTCTAGATCAGGTTGCAAATTTTATAATAAAAAATTCTGAATCTGCACCAGTTTTGAAAACTGATGCTCAATATGCTGATCCTTTCACAGGAGGCAGTAGGTACATTCCACAGTCGACAACAAATACAGTTTCGCACGAATTCACGAGATCAACAGCATCAAATTCTTCAGACGCATCTGTACCTTCTTATATACCTCATACAAAATACTTGAAATTGGAACAAGCTAATCTTTCTCAAATTTTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGA]

[+] EMBL BI512380             [TAATGGCATAGAATATGATTATGTGTTTTCAGTGGATATACAAGATGGTATTCCTCCATTAAAATTACCTTATAATAATGATCAGGATCCTTGGCATGTTGCCCAGAAGTTCCTTCATGATAATGGTCTTAGTCAATTGTTTCTAGATCAGGTTGCAAATTTTATAATAAAAAATTCTGAATCTGCACCAGTTTTGAAAACTGATGCTCAATATGCTGATCCTTTCACAGGAGGCAGTAGGTACATTCCACAGTCGACAACAAATACAGTTTCGCACGAATTCACGAGATCAACAGCATCAAATTCTTCAGACGCATCTGTACCTTCTTATATACCTCATACAAAATACTTGAAATTGGAACAAGCTAATCTTTCTCAAATTTTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGA]




>consensus_2604#0
TAATGGCATAGAATATGATTATGTGTTTTCAGTGGATATACAAGATGGTATTCCTCCATT
AAAATTACCTTATAATAATGATCAGGATCCTTGGCATGTTGCCCAGAAGTTCCTTCATGA
TAATGGTCTTAGTCAATTGTTTCTAGATCAGGTTGCAAATTTTATAATAAAAAATTCTGA
ATCTGCACCAGTTTTGAAAACTGATGCTCAATATGCTGATCCTTTCACAGGAGGCAGTAG
GTACATTCCACAGTCGACAACAAATACAGTTTCGCACGAATTCACGAGATCAACAGCATC
AAATTCTTCAGACGCATCTGTACCTTCTTATATACCTCATACAAAATACTTGAAATTGGA
ACAAGCTAATCTTTCTCAAATTTTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGA
TCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGC
TTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGA

consensusID : consensus_2604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 240
fasta sequence 
                              [TATTTCATTTATAATGATAGAATTAATTAACGAATTGTTTAAAATATTTGTTTAAAATATTTTTTTGTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGAAAATACTTTTAAACTGGTCAGATGATATATTATTTCCT]

[+] EMBL BI515324             [TATTTCATTTATAATGATAGAATTAATTAACGAATTGTTTAAAATATTTGTTTAAAATATTTTTTTGTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGAAAATACTTTTAAACTGGTCAGATGATATATTATTTCCT]




>consensus_2604#1
TATTTCATTTATAATGATAGAATTAATTAACGAATTGTTTAAAATATTTGTTTAAAATAT
TTTTTTGTAGAAAAGATAAAAGAATTAAATACTAAACAAAATGATCCTTTTAAAGTACCA
AATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCAAGCTTCTGAGCAATTAAAA
ACTGATGCTTTAAGCACTTTGAAAATACTTTTAAACTGGTCAGATGATATATTATTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2604#0      TAATGGCATAGAATATGATTATGTGTTTTCAGTGGATATACAAGATGGTATTCCTCCATT 60
consensus_2604#1      ------------------------------------------------------------
                                                                                  

consensus_2604#0      AAAATTACCTTATAATAATGATCAGGATCCTTGGCATGTTGCCCAGAAGTTCCTTCATGA 120
consensus_2604#1      ------------------------------------------------------------
                                                                                  

consensus_2604#0      TAATGGTCTTAGTCAATTGTTTCTAGATCAGGTTGCAAATTTTATAATAAAAAATTCTGA 180
consensus_2604#1      ------------------------------------------------------------
                                                                                  

consensus_2604#0      ATCTGCACCAGTTTTGAAAACTGATGCTCAATATGCTGATCCTTTCACAGGAGGCAGTAG 240
consensus_2604#1      ------------------------------------------------------------
                                                                                  

consensus_2604#0      GTACATTCCACAGTCGACAACAAATACAGTTTCGCACGAATTCACGAGATCAACAGCATC 300
consensus_2604#1      ------------------------------------------------------------
                                                                                  

consensus_2604#0      AAATTCTTCAGACGCATCT-GTACCTTCTTATATACCTCAT--ACAAAATACTTGAAATT 357
consensus_2604#1      --------------TATTTCATTTATAATGATAGAATTAATTAACGAATTGTTTAAAAT- 45
                                     ** *  *   *  * *** *  * **  ** ** *  ** **** 

consensus_2604#0      GGAACAAGCTAATCTTTCTCAAATTTTAGAAAAGATAAAAGAATTAAATACTAAACAAAA 417
consensus_2604#1      --ATTTGTTTAAAATATTTT--TTTGTAGAAAAGATAAAAGAATTAAATACTAAACAAAA 101
                        *      ***  * * *    ** **********************************

consensus_2604#0      TGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCA 477
consensus_2604#1      TGATCCTTTTAAAGTACCAAATGATAAATTGGAATCTTTGGTGAAACTTGCTGGTGATCA 161
                      ************************************************************

consensus_2604#0      AGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGA------------------- 518
consensus_2604#1      AGCTTCTGAGCAATTAAAAACTGATGCTTTAAGCACTTTGAAAATACTTTTAAACTGGTC 221
                      *****************************************                   

consensus_2604#0      -------------------
consensus_2604#1      AGATGATATATTATTTCCT 240


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)