cluster # 2650

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Apis mellifera
cluster # 2650 cluster # 2650 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2650#0 length = 557 sequences # 1

consensus_2650#1 length = 481 sequences # 1

consensusID : consensus_2650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCCTCCCCCTTGAAAAAAAATTTCACGCAATTTCGTTCACGTGATTAAAATCGTTTCGCGGTTTCCCGTGGCGCGCGAGCGAAACGGAACAACGAGCAGGAACAAAGAGGGGGAGGGAGGGGGGAGAATAGATGGATTTTTTTTTTTCGAAGAACGAAAAAGCTACTTGTTGCGTGGCGCAGAACCAATGAAATTTCCGGTGAAAATTTAACGAATGTATTCGCGAGAACATATACACGTCGACGAATTGCTCCGATACCCGTACAGTTTCTAGAGTTTTTCGCAATTTTCGGGAAAAATTGGTGGCCGAAAAACGAAGAAAAAGAGAGAGAGAAAAAATCGATACCTCGTTTCGAGGAATCGACTCGACTCGAATCGATTATCTCGTCGGCGATCCCGGAAACCGCTCGACCGATCTTATTTCCTGGATAAGTCTCGCTTTGAAGGGGACAAGCGGACGGAGAAAAGGGAAGGAAATCGAGGGAATCGCGCGTTACACG]

[+] EMBL BI502920             [CGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCCTCCCCCTTGAAAAAAAATTTCACGCAATTTCGTTCACGTGATTAAAATCGTTTCGCGGTTTCCCGTGGCGCGCGAGCGAAACGGAACAACGAGCAGGAACAAAGAGGGGGAGGGAGGGGGGAGAATAGATGGATTTTTTTTTTTCGAAGAACGAAAAAGCTACTTGTTGCGTGGCGCAGAACCAATGAAATTTCCGGTGAAAATTTAACGAATGTATTCGCGAGAACATATACACGTCGACGAATTGCTCCGATACCCGTACAGTTTCTAGAGTTTTTCGCAATTTTCGGGAAAAATTGGTGGCCGAAAAACGAAGAAAAAGAGAGAGAGAAAAAATCGATACCTCGTTTCGAGGAATCGACTCGACTCGAATCGATTATCTCGTCGGCGATCCCGGAAACCGCTCGACCGATCTTATTTCCTGGATAAGTCTCGCTTTGAAGGGGACAAGCGGACGGAGAAAAGGGAAGGAAATCGAGGGAATCGCGCGTTACACG]




>consensus_2650#0
CGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCC
TCCCCCTTGAAAAAAAATTTCACGCAATTTCGTTCACGTGATTAAAATCGTTTCGCGGTT
TCCCGTGGCGCGCGAGCGAAACGGAACAACGAGCAGGAACAAAGAGGGGGAGGGAGGGGG
GAGAATAGATGGATTTTTTTTTTTCGAAGAACGAAAAAGCTACTTGTTGCGTGGCGCAGA
ACCAATGAAATTTCCGGTGAAAATTTAACGAATGTATTCGCGAGAACATATACACGTCGA
CGAATTGCTCCGATACCCGTACAGTTTCTAGAGTTTTTCGCAATTTTCGGGAAAAATTGG
TGGCCGAAAAACGAAGAAAAAGAGAGAGAGAAAAAATCGATACCTCGTTTCGAGGAATCG
ACTCGACTCGAATCGATTATCTCGTCGGCGATCCCGGAAACCGCTCGACCGATCTTATTT
CCTGGATAAGTCTCGCTTTGAAGGGGACAAGCGGACGGAGAAAAGGGAAGGAAATCGAGG
GAATCGCGCGTTACACG

consensusID : consensus_2650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [GAGAAACATTCAATGGAGAGAGCTAACGTAAAACGGATTCTAGAAGAACAAAAGCTATTTATTATGAGATGAATTAACCGTTTTTCAATAATCTAAATATATTTCACGGACAAAAGGCGAGCATCGTTTCGTTTCTTCGTCGCGAATCCGAAAGAAAGAGAGAGAGAGAAATATCTTAGTCTTTTAATTAATATAAAACGGATAATAATAAGAATCGTAGAAAAAGATCGTATTATCCCCGGATCTCTCGACAATACCGTTAATTTATCATGCGAAAAAATAAGCCAGATGCTGCAGTAATCGGCACGAATATTCCACCTCGACCTCGACTGGGTGCCCGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCCTCCTCTCCCCCTTGAAAAAAAAAATCATAGTTAACAAGGCACTGCCACACACAGGACCAACAAAGAAAAGTCGAGAAAGTGAG]

[+] EMBL BI503556             [GAGAAACATTCAATGGAGAGAGCTAACGTAAAACGGATTCTAGAAGAACAAAAGCTATTTATTATGAGATGAATTAACCGTTTTTCAATAATCTAAATATATTTCACGGACAAAAGGCGAGCATCGTTTCGTTTCTTCGTCGCGAATCCGAAAGAAAGAGAGAGAGAGAAATATCTTAGTCTTTTAATTAATATAAAACGGATAATAATAAGAATCGTAGAAAAAGATCGTATTATCCCCGGATCTCTCGACAATACCGTTAATTTATCATGCGAAAAAATAAGCCAGATGCTGCAGTAATCGGCACGAATATTCCACCTCGACCTCGACTGGGTGCCCGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCCTCCTCTCCCCCTTGAAAAAAAAAATCATAGTTAACAAGGCACTGCCACACACAGGACCAACAAAGAAAAGTCGAGAAAGTGAG]




>consensus_2650#1
GAGAAACATTCAATGGAGAGAGCTAACGTAAAACGGATTCTAGAAGAACAAAAGCTATTT
ATTATGAGATGAATTAACCGTTTTTCAATAATCTAAATATATTTCACGGACAAAAGGCGA
GCATCGTTTCGTTTCTTCGTCGCGAATCCGAAAGAAAGAGAGAGAGAGAAATATCTTAGT
CTTTTAATTAATATAAAACGGATAATAATAAGAATCGTAGAAAAAGATCGTATTATCCCC
GGATCTCTCGACAATACCGTTAATTTATCATGCGAAAAAATAAGCCAGATGCTGCAGTAA
TCGGCACGAATATTCCACCTCGACCTCGACTGGGTGCCCGAGGTAAATCGATTTTCAGCG
AAACTCTCGGCCGTCCACGAATAATAGATCCCCTCCCCTCCTCTCCCCCTTGAAAAAAAA
AATCATAGTTAACAAGGCACTGCCACACACAGGACCAACAAAGAAAAGTCGAGAAAGTGA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2650#0      CGAGGTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCA-CGAATAATAGATCCCCTCCC 59
consensus_2650#1      -------GAGAAACATTCAATGGAGAGAGCTAACGTAAAACGGATTCTAGAAGAACAAAA 53
                              *   *  ****  * *     *   ***  * ** **  ****    *    

consensus_2650#0      -CTCCCCCTTGAAAAAAAATTTCACGCAATTTCGTTCACGTGATTAAAATCGTTTCGCGG 118
consensus_2650#1      GCTATTTATTATGAGATGAATTAACCGTTTTTCAATAAT----CTAAATATATTTCACGG 109
                       **     **   * *  * ** **    ****  * *      ****    **** ***

consensus_2650#0      TTTCCCGTGGCGCGCGAGCGAAACGGAACAACGAGCAGGAACAAAGAGGGGGAGGGAGGG 178
consensus_2650#1      --ACAAAAGGCGAGC-ATCGTTTCGTTTCTTCGTCGCGAATCCGAAAGAAAGAGAGAGAG 166
                         *    **** ** * **   **   *  **    * * *  * **   *** *** *

consensus_2650#0      GGGAGAATAGATGGATTTTTTTTTTTCGAAGAACGAAAAAGCTACTTGTTGCGTGGCGCA 238
consensus_2650#1      AGAAATATCT-TAGTCTTTTAATTAATATAAAACGGATAA-TAATAAGAATCGTAGAAAA 224
                       * *  **   * *  ****  **     * **** * **   *   *   *** *   *

consensus_2650#0      GAACCAATGAAATTTCCGGTGAAAATTTAACGAATGTATTCGCGAGAACATATACACGTC 298
consensus_2650#1      AGATCG-TATTATCCCCGG-----ATCTCTCGACAATAC---CGTTAATTTAT-CATGCG 274
                        * *  *   **  ****     ** *  ***   **    **  **  *** ** *  

consensus_2650#0      GACGAATTGCTCCGATACCCGTACAGTTTCTA-GAGTTTTTCGCAATTTTCGGGAAAAAT 357
consensus_2650#1      AAAAAATAAGCCAGATGCTGCAGTAATCGGCACGAATATTCCAC----CTCGACCTCGAC 330
                       *  ***    * *** *      * *    * ** * ** * *     ***      * 

consensus_2650#0      TGGTGGCCGAAAAACGAAGAAAAAGAGAGAGAGAAAAAATCGATACCTCGTTTCGAGGAA 417
consensus_2650#1      TGGGTGCCCGAG---GTAAATCGATTTTCAGCGAAACTCTCGGCCGTCCA---CGAATAA 384
                      ***  ***  *    * * *   *     ** ****   ***      *    ***  **

consensus_2650#0      TCGACTCGACTCGAATCGATTATCTCGTCGGCGATCCCGGAAACCGCTCGACCGATCTTA 477
consensus_2650#1      TAGA-TCCCCTC----CCCTCCTCTCCCC------CTTGAAAA------AAAAAATCATA 427
                      * ** **  ***    *  *  ****  *      *  * ***       *   *** **

consensus_2650#0      TTTCCTGGATAAGTCTCGCTTTGAAGGGGACAAGCGGACGGAGAAAAGGGAAGGAAATCG 537
consensus_2650#1      GT---TAACAAGGCACTGCCACACACAGGACCA----ACAAAGAAAAGTCGAGAAAGT-G 479
                       *   *    * *    **     *  **** *    **  *******   ** ** * *

consensus_2650#0      AGGGAATCGCGCGTTACACG 557
consensus_2650#1      AG------------------ 481
                      **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)