cluster # 2748

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Apis mellifera
cluster # 2748 cluster # 2748 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2748#0 length = 412 sequences # 1

consensus_2748#1 length = 412 sequences # 1

consensusID : consensus_2748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [AAAAAAGTGGAATCAAAATTATTGGAAAATTGAACTTCGATTACCATTTGAAAGTATTNNNCTTTTTCAATTGTTTAATTTTGTTTCAACGAGCGAAACAAATTCTCCGTGATAATGACGAAAGATAAACAATCTTGAAGGAAGAAAAGGAGAGAGGACCTTGGAAACGTGTAATGATTTTTTTTTCTTGTAGAGATTGAAAAAGTATATTGATAAAATTTCGAAGCTGATACAAACGGAGTGCATCCATTTATTGTAACTGATTATAGATTTGAAAGACGAAGTTCAGAAATAGAAAAAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATG]

[-] EMBL BI514708             [AAAAAAGTGGAATCAAAATTATTGGAAAATTGAACTTCGATTACCATTTGAAAGTATTNNNCTTTTTCAATTGTTTAATTTTGTTTCAACGAGCGAAACAAATTCTCCGTGATAATGACGAAAGATAAACAATCTTGAAGGAAGAAAAGGAGAGAGGACCTTGGAAACGTGTAATGATTTTTTTTTCTTGTAGAGATTGAAAAAGTATATTGATAAAATTTCGAAGCTGATACAAACGGAGTGCATCCATTTATTGTAACTGATTATAGATTTGAAAGACGAAGTTCAGAAATAGAAAAAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATG]




>consensus_2748#0
AAAAAAGTGGAATCAAAATTATTGGAAAATTGAACTTCGATTACCATTTGAAAGTATTNN
NCTTTTTCAATTGTTTAATTTTGTTTCAACGAGCGAAACAAATTCTCCGTGATAATGACG
AAAGATAAACAATCTTGAAGGAAGAAAAGGAGAGAGGACCTTGGAAACGTGTAATGATTT
TTTTTTCTTGTAGAGATTGAAAAAGTATATTGATAAAATTTCGAAGCTGATACAAACGGA
GTGCATCCATTTATTGTAACTGATTATAGATTTGAAAGACGAAGTTCAGAAATAGAAAAA
AAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACAC
ACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATG

consensusID : consensus_2748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [TTAAAACAGAGATTGTCGTTCGAGAAACATCGAAGGGATCGACGAAGAGAGAAAAAGAAAAAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATGGATTATATTGGCGATCGAACGAACGAGAGAAAAAAGAAAGAAAAAAAAAGAAAGGATGTCTGTAGTAGGGCCTAAGCACGAGTATCGAAAGAGGAGAAAAATGAAATATAGGACGGTGTATCATCATCATCATCGAGGAGATGAGAATAACAGGTGAGAGGAAGGTACGAGTATTGGCAGAGGACACCCGTGTATCTTTTTTTTTGGAAAAGGGAGGGCGACAAATCGTCGGATAACG]

[+] EMBL BI511325             [TTAAAACAGAGATTGTCGTTCGAGAAACATCGAAGGGATCGACGAAGAGAGAAAAAGAAAAAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATGGATTATATTGGCGATCGAACGAACGAGAGAAAAAAGAAAGAAAAAAAAAGAAAGGATGTCTGTAGTAGGGCCTAAGCACGAGTATCGAAAGAGGAGAAAAATGAAATATAGGACGGTGTATCATCATCATCATCGAGGAGATGAGAATAACAGGTGAGAGGAAGGTACGAGTATTGGCAGAGGACACCCGTGTATCTTTTTTTTTGGAAAAGGGAGGGCGACAAATCGTCGGATAACG]




>consensus_2748#1
TTAAAACAGAGATTGTCGTTCGAGAAACATCGAAGGGATCGACGAAGAGAGAAAAAGAAA
AAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTAC
ACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATGGATTAT
ATTGGCGATCGAACGAACGAGAGAAAAAAGAAAGAAAAAAAAAGAAAGGATGTCTGTAGT
AGGGCCTAAGCACGAGTATCGAAAGAGGAGAAAAATGAAATATAGGACGGTGTATCATCA
TCATCATCGAGGAGATGAGAATAACAGGTGAGAGGAAGGTACGAGTATTGGCAGAGGACA
CCCGTGTATCTTTTTTTTTGGAAAAGGGAGGGCGACAAATCGTCGGATAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2748#0      --------------------------------------------AAAAAAGTGGAATCAA 16
consensus_2748#1      TTAAAACAGAGATTGTCGTTCGAGAAACATCGAAGGGATCGACGAAGAGAGAAAAAGAAA 60
                                                                  ** * **   **  **

consensus_2748#0      AATTATTGGAAAATTGAACTTCGATTACCAT--TTGAAAGTATTNNNCTTTTTCAATTGT 74
consensus_2748#1      AAAAAAGAAAAAAGGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTAC 120
                      **  *    ****  *  ** ***  * * *  * *  *  * *      ** *   *  

consensus_2748#0      TTAATTTTGTTTCAACGAGCGAAACAAATTCTCCGTGATAATGACGAAAG-ATAAACAAT 133
consensus_2748#1      ACACACGTTTGATAACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATGGATTAT 180
                        *    * *   *****   *      ** *  * * *  **  *  *  **  *  **

consensus_2748#0      CTTGAAGGAAGAA--AAGGAGAGAGGACCTTGGAAACGTGTAATGATTTTTTTTTCTTGT 191
consensus_2748#1      ATTGGCGATCGAACGAACGAGAGAAAAAAGAAAGAAAAAAAAAGAAAGGATGTCTGTAGT 240
                       ***  *   ***  ** ******  *       **     **  *    * * * * **

consensus_2748#0      AGAGATTGAAAAAGTATATTGATAAAATTTCGAAGCTGATACAAACGGAGTGCATCCATT 251
consensus_2748#1      AGGGCCTAAGCACGAGTATCGA-AAGAGGAGAAAAATGAAATATA-GGACGGTGTATCAT 298
                      ** *  * *  * *  *** ** ** *     **  *** * * * ***  *  *    *

consensus_2748#0      TATTGTAACTGATTATAGATTTGAAAGACGAAGTTCAGAAATAGAAAAAAAAAGAAAAAA 311
consensus_2748#1      CATCATCATCGA--GGAGATGAGAATAAC--AGGTGAGAGGAAGGTACGAGTATTGGCAG 354
                       **  * *  **    ****  ***  **  ** * ***   **  *  *  *     * 

consensus_2748#0      GGGTTCTACGAGCAACGTCGTCGGGAAGACTTGGAGCTTCCGGGTACACACACGTTTGAT 371
consensus_2748#1      AGGACACCCGTGTATCTTTTTTTTTGGAAAAGGGAG-----GGCGACAAAT-CGTCGGAT 408
                       **     ** * * * *  *       *   ****     **  *** *  ***  ***

consensus_2748#0      AACGATTCACGAGGGTTGTAGGGGTTGGTGCTGCCATTATG 412
consensus_2748#1      AACG------------------------------------- 412
                      ****

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)