|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAACAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC-AAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA]
[+] EMBL BI508264 [ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAATTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAGGATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAGCTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAAAAAAA ]
[+] EMBL BI515705 [ CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAATCTAAAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGC AAAAAAGTTGGTTTGACGGGA ]
[+] EMBL BI512403 [ AAAAAGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTAACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAACCTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATAGTGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGAGTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGAAGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTTGTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATTATAGA]
consensusID : consensus_279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence
[CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA]
[+] EMBL BI505518 [CGTAACTGCACGTCATCTAACGTGTCTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAATAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGATTTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA]
[+] EMBL BI515473 [ CTCGAACGAATTCTTACTCCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAAAGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGGCAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAGTAATTGCAAATAGGATAAAAATAAGAAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_279#0 ACTAGATAGACGATATTTGTGTTTTGTGAGTGTGGACCGCGGAACAGTAACTAAAACTAA 60
consensus_279#1 ---------------------------------------------CGTAACTGCACGTCA 15
****** * * *
consensus_279#0 TTAGATTTGTAATTGAAGGAACTGATGTTCGGCTAAGAATTATGTCGGATATTGGTGCAG 120
consensus_279#1 TCTAACGTGT--CTTAACACGATAAGGATAGACGAAGAACCTACTTAAATGCCTCGAACG 73
* * *** * ** * * * * * * ***** * ** *
consensus_279#0 GATTACGATCGGTCACACGTCAAGTCAGCTGACATATTGCGCCCTGCTACACCGCAACAG 180
consensus_279#1 AATTCTTACT--CCATGTTGTGCGTTGGTTGCGACACGACTGCGTGTTGGAA-------- 123
*** * ** ** * ** * * * * ** * *
consensus_279#0 CTCTTGGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 240
consensus_279#1 -----AGTAAATGTATGGTGACACGCGGTCGTGAAGGAACAACTGGAGAGCGAGCTGTGG 178
******************************************************
consensus_279#0 CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 300
consensus_279#1 CAAGACAAGATTAATTATCTCCTACTTAGTTGATTGCAACTTGCTCGATATTCTTTCGAG 238
************************************************************
consensus_279#0 TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 360
consensus_279#1 TAATTGCAAATAGGATAAAAATAAGAACTTGTTCAATCATTGAGGTTCTATTGAGATAAA 298
************************************************************
consensus_279#0 CAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 420
consensus_279#1 TAAAGAAAATGGAGCGAGAATCTAACCCTATGCAAGCTCTATGTCGCAGCGGTTGTGGAT 358
***********************************************************
consensus_279#0 TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAAAGAAAAACTAAAAA 480
consensus_279#1 TTTATGGCTCTCCAGCCACAGATGGCCTTTGTTCTCTTTGTTATAA-------------- 404
**********************************************
consensus_279#0 AGAAGCAGCAACCTCCTGTATCAGCTGCCACTGTACCAACATCACAGACCGTCTCTGGTA 540
consensus_279#1 ------------------------------------------------------------
consensus_279#0 ACGCTGGTACGTTGCAGGGCGGTTTCGGTAGTCCTGCAGCTACAGGAAATACAGCCCAAC 600
consensus_279#1 ------------------------------------------------------------
consensus_279#0 CTACCATTCCTACCATACCTCAATCAACAACAGATCTACCCAATCCCAAAGAAATAAATA 660
consensus_279#1 ------------------------------------------------------------
consensus_279#0 GGGAGGATCAAGAAAATGAAGTAGGTGTAAGCAGTGGAGCGGTAGCAGAAGGATCTGTGA 720
consensus_279#1 ------------------------------------------------------------
consensus_279#0 GTAGTGGGGATGCAGATGATTGCTTTGATGGCAAAGAGACTGACAAAGAATCTAAGAAGA 780
consensus_279#1 ------------------------------------------------------------
consensus_279#0 AGAAAAATCGTTGCGCCGTGTGTCGCAAAAAAGTTGGTTTGACGGGATTTGAATGTCGTT 840
consensus_279#1 ------------------------------------------------------------
consensus_279#0 GTGGAGGACTGTTCTGCTCTGTGCATCGATACAGTGACAAGCACGATTGCAAATTTGATT 900
consensus_279#1 ------------------------------------------------------------
consensus_279#0 ATAGA 905
consensus_279#1 -----
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |