cluster # 2813

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Apis mellifera
cluster # 2813 cluster # 2813 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2813#0 length = 200 sequences # 1

consensus_2813#1 length = 193 sequences # 1

consensusID : consensus_2813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [CAGCAGTCATTTCTCTTCCATCTATTCCAGAAATACATTCTTTCTGTTCCATAATAGTTATAACCACCACGTTCTAACAATTTTCCAAAATATTCAACTGCAGTTTCGTCTTCGTTAAATCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAATTCAATCATCATAGCTATTGT]

[+] EMBL BG101532             [CAGCAGTCATTTCTCTTCCATCTATTCCAGAAATACATTCTTTCTGTTCCATAATAGTTATAACCACCACGTTCTAACAATTTTCCAAAATATTCAACTGCAGTTTCGTCTTCGTTAAATCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAATTCAATCATCATAGCTATTGT]




>consensus_2813#0
CAGCAGTCATTTCTCTTCCATCTATTCCAGAAATACATTCTTTCTGTTCCATAATAGTTA
TAACCACCACGTTCTAACAATTTTCCAAAATATTCAACTGCAGTTTCGTCTTCGTTAAAT
CTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAAT
TCAATCATCATAGCTATTGT

consensusID : consensus_2813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [ATTNTCTCTNCCATCTATATCCAGATTACNTTCTTTNTNNNCCATAGTANGTATANGCACCACNNACTNNCAGNTCTCCAAAATATTNAACGTGCAGTTTCGTCTTCNTTAAATCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAATTCAATCATCATAGCTATTG]

[+] EMBL BG101670             [ATTNTCTCTNCCATCTATATCCAGATTACNTTCTTTNTNNNCCATAGTANGTATANGCACCACNNACTNNCAGNTCTCCAAAATATTNAACGTGCAGTTTCGTCTTCNTTAAATCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAATTCAATCATCATAGCTATTG]




>consensus_2813#1
ATTNTCTCTNCCATCTATATCCAGATTACNTTCTTTNTNNNCCATAGTANGTATANGCAC
CACNNACTNNCAGNTCTCCAAAATATTNAACGTGCAGTTTCGTCTTCNTTAAATCTAAAT
GATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAATTCAATC
ATCATAGCTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2813#0      CAGCAGTCATTTCTCTTCCATCTATTCCAGAAATACATTCTTTCTGTTCCATAATAGTTA 60
consensus_2813#1      -------ATTNTCTCTNCCATCTATATCCAGATTACNTTCTTTNTNNNCCATAGTANGTA 53
                               * ***** ********  *   * *** ****** *   ***** **  **

consensus_2813#0      TAACCACCACGTTCTAACAATTTTCCAAAATATTCAAC-TGCAGTTTCGTCTTCGTTAAA 119
consensus_2813#1      TANGCACCACNNACTNNCAGNTCTCCAAAATATTNAACGTGCAGTTTCGTCTTCNTTAAA 113
                      **  ******   **  **  * *********** *** *************** *****

consensus_2813#0      TCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAA 179
consensus_2813#1      TCTAAATGATGTTGCATCATGTACCAATCCATGTATGGCTGCTGATTTTCCAGCCATTAA 173
                      ************************************************************

consensus_2813#0      TTCAATCATCATAGCTATTGT 200
consensus_2813#1      TTCAATCATCATAGCTATTG- 193
                      ********************

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)