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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT]
[+] EMBL BI504529 [TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTTTTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAGTGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTTCTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTTGTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTGTTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATATTCACATCCGGAAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTTAGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTACGACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGATAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGGAAATACTTGTAAAGTATTTTTTCCATCTT]
consensusID : consensus_2835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT]
[+] EMBL BE844607 [TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAACACCTTATCCAAATATTTCATTTCTTTGATATCTGTATAAGTCAATATTCCCTTATTTTTCTCGTGCATTTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTTGATTTTGAGCTAATTCATAAAGACCAAATGCTATCGTTGATGAAGAAGTTTCAAATCCGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGTCCATTTTTTCTGGATGTTCTTTCAGTTGCATGAGCATATTGATAAAATCTGATCGAACTATATCGTTATCCTTTCTATATTTCATTGTGTCACTGACTAAATTTATAAAAAATTCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATGGAAAAAATACTTTACAAGTATTTCCGATCATCAATTTCAAACTAGGTGAAAAAATCTTCTTGCCCCATTCTACGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2835#0 TCATCAAAATATGCTTTTTGGAAAGATCGTGGCATATCTGGACCAAAACCTATAGTATTT 60
consensus_2835#1 ------------------------------------------------------------
consensus_2835#0 TTTGGCAATTTTGGGAATTCCATAGTGAAAAAAAGATCAATATCTGAAACTGTTAAAAAG 120
consensus_2835#1 --------TTTTCTGGATAATGTCGACAATATTGGATACTTCCTTAAGGTTTCTTTAAA- 51
**** * ** * * ** * *** * * * * * ***
consensus_2835#0 TGGTACGACGATTACAAACATGAATCAGTTTTTGGGATATACGAGGGAACAATTCCGGTT 180
consensus_2835#1 -----CACCTTATCCAAATAT---TTCATTTCTTTGATATCT----GTATAAGTCAATAT 99
* * * **** ** * *** * ***** * * ** ** *
consensus_2835#0 CTTGTCATTAACGATTTAGATATGATCAAAGATGTTCTCATCAGAGATTTTTCAATATTT 240
consensus_2835#1 TCCCTTATTTTTCTCGTGCAT-TTTTCTAATTTCTTCCCGTAATTTATCTTGTATTTCTT 158
* *** * ** * ** ** * *** * * * ** ** * * **
consensus_2835#0 GTGGATCGAGGATTTCATACTTTTCCGAAGATAGAACCATTGACGCAACATCTCTTCTTG 300
consensus_2835#1 GATTTTGAGCTAATTCATAAAGACC---AAATGCTATCGTTGATGAAGAAGTTTCAAATC 215
* * * ****** * * ** * * **** * * * * *
consensus_2835#0 TTGGAGGCTGAAAGATGGCGACCAATGCGAATGAAACTTTCGCCGATA-TTCACATCCGG 359
consensus_2835#1 CGGCAATGAAGAAGACGACTGCTTGCGCAGTTAACAAAGTATCTGTTAATTCAATATTGT 275
* * **** * * * ** * * * * * * ** **** *
consensus_2835#0 AAAACTGAAAGAGATGTTCTCCCTTATAGTGGAAAGCGCGGGAAATTTAGAGAAATATTT 419
consensus_2835#1 CCATTTTTTCTGGATGTTCTTTC----AGTTGCATGAGC---ATATTGATAAAA----TC 324
* * ******** * *** * * * ** * *** * * ** *
consensus_2835#0 AGATGAAGTGATAAAGAAGAACGAAATGGTGGAATGCCGTGATTTAGCTGCAAAATTTAC 479
consensus_2835#1 TGATCGAACTATATCGTTATCCT---TTCTATATTTCATTGTGTCACTGACTAAATTTAT 381
*** * *** * * * * * * * ** * * * *******
consensus_2835#0 GACCGACGTTATTGGTAGTTGCGCTTTTGGGATCAACACAAATTCCCTTTTGGAGGAGGA 539
consensus_2835#1 AAAAAAT-TCATCGACGTCTTTCATTGTAAATATATTACCGATTACTTCATACAAAGATG 440
* * * ** * * ** * * ** *** * * * *
consensus_2835#0 TAGTGAATTTCGTAGNATGGGCAAGAAGATTTTTTCACCTAGTTTGAAATTGATGATCGG 599
consensus_2835#1 GAAAAAATACTTTA-------CAAGTATTTCCGATCATCAATTTCAAACTAGGTGA--AA 491
* *** ** **** * * *** * * ** ** * * ***
consensus_2835#0 AAATACTTGTAAAGTATTTTTTCCATCTT 628
consensus_2835#1 AAATCTTCTTGCCCCATTCTACGAAAT-- 518
**** * * *** * *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |