|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGCTGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAAATTAAAATCGTTGTTGAAACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCAAAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT]
[+] EMBL BI509497 [CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGCTGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAAATTAAAATCGTTGTTGAAACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCAAAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT]
consensusID : consensus_2837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[TTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTCTTATATATATATATATATTAAATTTTGAAAGAAAAAAATAATATATCGTGTAATCATATTAATGATTAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA]
[+] EMBL BI514669 [TTTCGCTGTCGACTTTAGGTTAGGTTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGAACCAGATTTGATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTATGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTCTTATATATATATATATATTAAATTTTGAAAGAAAAAAATAATATATCGTGTAATCATATTAATGATTAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAACCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGAAATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAATTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCATAAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2837#0 CGCATTATGTTGTGCAACATCAGCAAGTATTATATTTTATGTGCATTATCAACAAGAAGC 60
consensus_2837#1 ------------------------------------------------------------
consensus_2837#0 TGAGAGAAAACAGCTTGAGATAGGTGTAGAACGCGATATTCAACGACAAGAACGGAATAA 120
consensus_2837#1 ------------------------------TTTCGCTGTCGACT--TTAGGTTAGGTTAG 28
** * * * ** * **
consensus_2837#0 ATTAAA-ATCGTTGTTGAA-ACAACAAACACAGTTGACGGATCAGTTGCGAGAATCGTCA 178
consensus_2837#1 ATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACAGA-ACCAGATTTGATT 87
**** * * * **** * ** * **** ** * *** * *** * *
consensus_2837#0 AAAAACGAACAAAATCTTCAAACTTTATAACATTAATTTCGCTGTCGACTTTAGGTTAGG 238
consensus_2837#1 TGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAG--AGCATCACCAGATTTA- 144
** *** **** * **** ** * * * * * * * ** **
consensus_2837#0 TTAGATTATACAATATCAATGAACATAATGACTACAGAAGAACCAACTGAACCAGATTTG 298
consensus_2837#1 -TGGCCTGAACAAAGTAGGTATATTTTATGTATACGTGCTACTC-------TTATAT--- 193
* * * **** * * * * *** *** * * * **
consensus_2837#0 ATTTGCGTAGAGGAAAGTCTTATGAGTTTAGAAAAATTAGATAGAGCATCACCAGATTTA 358
consensus_2837#1 ATATATATATATTAAA-TTTTGAAAG---AAAAAAATAATATATCGTGTAATCATATTAA 249
** * ** * *** * ** ** * ****** * *** * * * ** *** *
consensus_2837#0 TGGCCTGAACAAATTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAA 418
consensus_2837#1 TGAT-TAATGAAGTTCCAGGTGTAAACGAATTTGTAGCTCAAAATTCACCTCAAACAGAA 308
** * * ** ***********************************************
consensus_2837#0 CCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGA 478
consensus_2837#1 CCATCTGCTTGGGCTGCTGGTCTCACTCCAGATGATATAAATCAGTTACATCAATTAGGA 368
************************************************************
consensus_2837#0 AATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAA 538
consensus_2837#1 AATTTGTCAATGGGTGGTTTAATATCCGAAGTAAAAAAATTACATGACATGGCATATCAA 428
************************************************************
consensus_2837#0 TTAGGATTGGAAGANNCAAAAGAGATGACTCGTGGGAAATATTTGAACATTTTCAAGCAT 598
consensus_2837#1 TTAGGATTGGAAGAGGCAAAAGAGATGACTCGTGGAAAATATTTAAACATTTTCAAGCAT 488
************** ******************* ******** ***************
consensus_2837#0 AAATAGCAAAAGTTTGATTAAAGATGATTATATAATCCATGTT- 641
consensus_2837#1 AAATAGCAAAAGTTTGATTAAAGATGATTATATGTAAGAAAATA 532
********************************* * *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |