cluster # 2870

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Apis mellifera
cluster # 2870 cluster # 2870 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2870#0 length = 577 sequences # 1

consensus_2870#1 length = 517 sequences # 1

consensusID : consensus_2870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [ACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCATCCTTACGCGACGAAAAAAGATAAAAAAAAAAAAAAGAAATAAATAGATTCGGGTTTGGGATATATAAGAAGTAAACGTAAATTTCGAAGAGAAAAAAAAAGGGCATGTTATGTCTGGTTAATAATAATAATAAACGACGAGAGTCGGATCGCGTCCGTGGATGTTCGGTCGTCGAATAACAGGAGCAGGAAATCGGTGAATCGATAGATTTTCCGTATTCTCTCTGAACGCGATAAGCGATATTGAACCGCGAACTCACGTTTGGAATCTTGTCGCTGCCTCTACTCTCACCGATTCGCCGATTTTCTTCTCGCGTTGTAGTAGTAGCTACTTTCTTCTAGCGATCTATTATTGATCTGTCTGAAGCGATAACGAAGACAAAAAAAAGAAAAAAGAAAGAAAAAAGAAAAAAAGAGCCAAGCGTTTACTGTACAATTATATTCTTTTACGTTTAACGAAATTACCATTGAGTAGACGAGTAGTATATTTTACATTATCGATACAGATACGATAGCGTTACCCCGTCTTACCCTAAT]

[+] EMBL BI506349             [ACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCATCCTTACGCGACGAAAAAAGATAAAAAAAAAAAAAAGAAATAAATAGATTCGGGTTTGGGATATATAAGAAGTAAACGTAAATTTCGAAGAGAAAAAAAAAGGGCATGTTATGTCTGGTTAATAATAATAATAAACGACGAGAGTCGGATCGCGTCCGTGGATGTTCGGTCGTCGAATAACAGGAGCAGGAAATCGGTGAATCGATAGATTTTCCGTATTCTCTCTGAACGCGATAAGCGATATTGAACCGCGAACTCACGTTTGGAATCTTGTCGCTGCCTCTACTCTCACCGATTCGCCGATTTTCTTCTCGCGTTGTAGTAGTAGCTACTTTCTTCTAGCGATCTATTATTGATCTGTCTGAAGCGATAACGAAGACAAAAAAAAGAAAAAAGAAAGAAAAAAGAAAAAAAGAGCCAAGCGTTTACTGTACAATTATATTCTTTTACGTTTAACGAAATTACCATTGAGTAGACGAGTAGTATATTTTACATTATCGATACAGATACGATAGCGTTACCCCGTCTTACCCTAAT]




>consensus_2870#0
ACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCATCCTTACGCGACGAAAAAAG
ATAAAAAAAAAAAAAAGAAATAAATAGATTCGGGTTTGGGATATATAAGAAGTAAACGTA
AATTTCGAAGAGAAAAAAAAAGGGCATGTTATGTCTGGTTAATAATAATAATAAACGACG
AGAGTCGGATCGCGTCCGTGGATGTTCGGTCGTCGAATAACAGGAGCAGGAAATCGGTGA
ATCGATAGATTTTCCGTATTCTCTCTGAACGCGATAAGCGATATTGAACCGCGAACTCAC
GTTTGGAATCTTGTCGCTGCCTCTACTCTCACCGATTCGCCGATTTTCTTCTCGCGTTGT
AGTAGTAGCTACTTTCTTCTAGCGATCTATTATTGATCTGTCTGAAGCGATAACGAAGAC
AAAAAAAAGAAAAAAGAAAGAAAAAAGAAAAAAAGAGCCAAGCGTTTACTGTACAATTAT
ATTCTTTTACGTTTAACGAAATTACCATTGAGTAGACGAGTAGTATATTTTACATTATCG
ATACAGATACGATAGCGTTACCCCGTCTTACCCTAAT

consensusID : consensus_2870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [AAAATAGAAAAAGAAAAAGTAAAAAAGAGACCTGTACTAAGGATTACTTATTAAATAAATGAACGGTGTTTTTCCGCCTATGAGTCGTATTTGCATCAGATGAATATACAGATGCATCTCACTTCTCACACTCTCTCTCTCTCTCTCTCTCTCTACCTTTCTCTTTCTCTCTCAGTTATACAGAGAACAGAACGAGATAGATTGTTATTTTCCATCTTTAATGCGATATTATTGTTATTATCATTATTATTATTATTATTATCAACACTGTACAAAGTTGGCAATAATTATTAAGAAATCCATCGTCGTAACGCGTTTATTAGCTGTGTTTTGAAGAAAGAAAGAAACGCATGACGAGATCCACACTCGTCATTCAAGACAGAAGAGAAGAAAATTCGTTGCAACTACAGCGTATAAAAAAAAAAAAAATAATAAATAAATAAATAAAGCGTGCCCTTTTACCTAATCTAATCCTGCACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCA]

[+] EMBL BE844483             [AAAATAGAAAAAGAAAAAGTAAAAAAGAGACCTGTACTAAGGATTACTTATTAAATAAATGAACGGTGTTTTTCCGCCTATGAGTCGTATTTGCATCAGATGAATATACAGATGCATCTCACTTCTCACACTCTCTCTCTCTCTCTCTCTCTCTACCTTTCTCTTTCTCTCTCAGTTATACAGAGAACAGAACGAGATAGATTGTTATTTTCCATCTTTAATGCGATATTATTGTTATTATCATTATTATTATTATTATTATCAACACTGTACAAAGTTGGCAATAATTATTAAGAAATCCATCGTCGTAACGCGTTTATTAGCTGTGTTTTGAAGAAAGAAAGAAACGCATGACGAGATCCACACTCGTCATTCAAGACAGAAGAGAAGAAAATTCGTTGCAACTACAGCGTATAAAAAAAAAAAAAATAATAAATAAATAAATAAAGCGTGCCCTTTTACCTAATCTAATCCTGCACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCA]




>consensus_2870#1
AAAATAGAAAAAGAAAAAGTAAAAAAGAGACCTGTACTAAGGATTACTTATTAAATAAAT
GAACGGTGTTTTTCCGCCTATGAGTCGTATTTGCATCAGATGAATATACAGATGCATCTC
ACTTCTCACACTCTCTCTCTCTCTCTCTCTCTCTACCTTTCTCTTTCTCTCTCAGTTATA
CAGAGAACAGAACGAGATAGATTGTTATTTTCCATCTTTAATGCGATATTATTGTTATTA
TCATTATTATTATTATTATTATCAACACTGTACAAAGTTGGCAATAATTATTAAGAAATC
CATCGTCGTAACGCGTTTATTAGCTGTGTTTTGAAGAAAGAAAGAAACGCATGACGAGAT
CCACACTCGTCATTCAAGACAGAAGAGAAGAAAATTCGTTGCAACTACAGCGTATAAAAA
AAAAAAAAATAATAAATAAATAAATAAAGCGTGCCCTTTTACCTAATCTAATCCTGCACA
AAAATATCGATCGTTCTGAATATATCTATATAGAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2870#0      ACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCATCCTTACGCGACGAAAAAAG 60
consensus_2870#1      ---------------------------------------------------------AAA 3
                                                                               ** 

consensus_2870#0      ATAAAAAAAAAAAAAAGAAATAAATAGATTCGGGTTTGGGAT-ATATAAGAAGTAAACGT 119
consensus_2870#1      ATAGAAAAAGAAAAAGTAAA-AAAGAGACCTGTACTAAGGATTACTTATTAAATAAATGA 62
                      *** ***** *****  *** *** ***   *   *  **** *  **  ** **** * 

consensus_2870#0      AAATTTCGAAGAGAAAAAAAAAGGGCATGTTATGTCTGGTTAATAATAATAATAAACGAC 179
consensus_2870#1      ACGGTGTTTTTCCGCCTATGAGTCGTAT-TTGCATCAGATGAATA-TACAGATGCATCTC 120
                      *   *            *  *   * ** **   ** * * **** **   **  *   *

consensus_2870#0      GAGAGTCGGATCGCGTCCGTGGATGT-----TCGGTCGTCGAATAACAGGAGCAGGAAAT 234
consensus_2870#1      ACTTCTCACACTCTCTCTCTCTCTCTCTCTCTCTACCTTTCTCTTTCTCTCTCAGTTATA 180
                           **  *     **  *   * *     **   * *    *  *     ***  *  

consensus_2870#0      CGGTGAATCGATAGATTTTCCGTATTCTCTCTGAACGCGATAAGCGATATTGAACCGCGA 294
consensus_2870#1      CAGAGAACAGAACGAGATAGATTGTTATTTTCCATCTTTA-ATGCGATATT--ATTGTTA 237
                      * * ***  **  **  *    * ** * *   * *   * * ********  *  *  *

consensus_2870#0      ACTCACGTTTGGAATCTTGTCGCTGCCTCTACTCTCACCGATTCGCCGATTTTCTTCTCG 354
consensus_2870#1      -TTATCATTATTATTATTATTATTATCAACACTGT-ACAAAGTTGGCAATAAT------- 288
                        *  * **   * * ** *   *  *   *** * **  * * * * **  *       

consensus_2870#0      CGTTGTAGTAGTAGCTACTTTCTTCTAGCG-ATCTATTATTGATCTGTCTGAAGCGATAA 413
consensus_2870#1      -----TATTAAGAAATCCATCGTCGTAACGCGTTTATTAGCTGTGT-TTTGAAGAAAGAA 342
                           ** **  *  * * *  *  ** **  * *****    * * * *****  * **

consensus_2870#0      CGAAG-ACAAAAAAAAGAAAAAAGAAAGAAAAAAGAAAAAAAGAGCCAAGCGTTTACTGT 472
consensus_2870#1      AGAAACGCATGACGAGATCCACACTCGTCATTCAAGACAGAAGAGAAGAAAATTCGTTG- 401
                       ***   **  *  *     * *      *   *  * * *****   *   **   ** 

consensus_2870#0      ACAATTATATTCTTTTACGTTTAACGAAATTACCATTGAGTAGACGAGTAGTATA-TTTT 531
consensus_2870#1      -CAACTACAGCGTATAAAAAAAAAAAAAATAATAAATAAATAAATAAAGCGTGCCCTTTT 460
                       *** ** *   * * *     **  **** *  * * * ** *  *   **    ****

consensus_2870#0      ACATTATCGATACAGATACGATAGCGTTACCCCGTCTTACCCTAAT----------- 577
consensus_2870#1      ACCTAATCTAATCCTGCACAAAAATATCGATCGTTCTGAATATATCTATATAGAGCA 517
                      ** * *** *  *    ** * *   *    *  *** *   **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)