cluster # 2879

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Apis mellifera
cluster # 2879 cluster # 2879 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2879#0 length = 534 sequences # 1

consensus_2879#1 length = 520 sequences # 1

consensusID : consensus_2879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGCTCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTCGTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCCAGCAAGAAACGATCGATCGCGTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAAAGTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATATTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTGGATATATCAAAAGATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAGGATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAAGTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCCACATATCTC]

[+] EMBL BI513220             [ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGCTCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTCGTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCCAGCAAGAAACGATCGATCGCGTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAAAGTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATATTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTGGATATATCAAAAGATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAGGATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAAGTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCCACATATCTC]




>consensus_2879#0
ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGCTCGATCGATAT
TACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTCGTTCTTTGTAA
CAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCCAGCAAGAAACG
ATCGATCGCGTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAAAGTTCGTGCAGT
TTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATATTCGCAATTACTT
TTTATTATTGCTTCCACATCCGTGACACCGGTGGATATATCAAAAGATGACAGTTGCGAG
CGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAGGATCCTTTGCCCGGG
GAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAAGTTGAAGTAAAAACC
TACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCCACATATCTC

consensusID : consensus_2879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTTTTGCTCGTTACAACTTTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATCGCACCTTTTGATATATCCACCGGTGTCACGGATGTGGAAGCAATAATAAAAAGTAATTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGAGTTTTCACGTGGAAGTGTTGGCACGATGTATAAAAAAAAAAAAGGAGTGGAAAAATTTCTAAGAATACACGCTCGATGTTGCAACATTAATACGATGTCAAAGGTAAGATTAATCGTTGGCGCGATAGAGAAAAAAAAAAAAAGTATGGAAGTGGAGGATTTTTTATTCCAATTCTACAAATTTTTCGATGGCAATACAGAAAAGCTGGTAATAATTGACGAAACCGTGGAAATCCGAGAATCCTAGTTGAATTCTAGTAATTTTTTCTCGCCAACGGGGGGAAAATTGGTATTACCGATA]

[+] EMBL BE844459             [AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTTTTGCTCGTTACAACTTTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATCGCACCTTTTGATATATCCACCGGTGTCACGGATGTGGAAGCAATAATAAAAAGTAATTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGAGTTTTCACGTGGAAGTGTTGGCACGATGTATAAAAAAAAAAAAGGAGTGGAAAAATTTCTAAGAATACACGCTCGATGTTGCAACATTAATACGATGTCAAAGGTAAGATTAATCGTTGGCGCGATAGAGAAAAAAAAAAAAAGTATGGAAGTGGAGGATTTTTTATTCCAATTCTACAAATTTTTCGATGGCAATACAGAAAAGCTGGTAATAATTGACGAAACCGTGGAAATCCGAGAATCCTAGTTGAATTCTAGTAATTTTTTCTCGCCAACGGGGGGAAAATTGGTATTACCGATA]




>consensus_2879#1
AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTT
TTGCTCGTTACAACTTTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATCGC
ACCTTTTGATATATCCACCGGTGTCACGGATGTGGAAGCAATAATAAAAAGTAATTGCGA
ATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGAGTTTTCACGTGGAAGTGTTGG
CACGATGTATAAAAAAAAAAAAGGAGTGGAAAAATTTCTAAGAATACACGCTCGATGTTG
CAACATTAATACGATGTCAAAGGTAAGATTAATCGTTGGCGCGATAGAGAAAAAAAAAAA
AAGTATGGAAGTGGAGGATTTTTTATTCCAATTCTACAAATTTTTCGATGGCAATACAGA
AAAGCTGGTAATAATTGACGAAACCGTGGAAATCCGAGAATCCTAGTTGAATTCTAGTAA
TTTTTTCTCGCCAACGGGGGGAAAATTGGTATTACCGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2879#0      -----------ATTATTCTCGTTATTACGGAAAAGGGACACCTATGCAAAAATAGCATGC 49
consensus_2879#1      AGCGTCGGCCGCTCGCAACTGTCATCTAGAAAAATGGGAAAAAAAATGTCTAAGAGGTTT 60
                                  *       ** **   * **** **  *   *       *     *  

consensus_2879#0      TCGATCGATATTACCGGTCGACAGTTCTCCTTTCGACCGCATAATTTCATCGACCCTGTC 109
consensus_2879#1      TTGCTCGTTACAACT--TTAACAACCATCGTTCAGACTAGATTAATTGTCCCAGGCGATC 118
                      * * *** **  **   *  ***    ** **  ***   ** * **   * *  *  **

consensus_2879#0      GTTCTTTGTAACAATTTCACGTATAAACCCGTTCTTTGTATAAATCTGCGTAAAATATCC 169
consensus_2879#1      GCACCTTTTGATATATCCACCGGTGTCACGGA----TGTGGAAGCAATAATAAAAAGTAA 174
                      *  * ** * * *  * ***   *    * *     ***  **       *****  *  

consensus_2879#0      AGCAAGAAACGATCGATCGC-GTCGTTCTAATCTTTAACAATTGTTGTTAGTACGTGGAA 228
consensus_2879#1      TTGCGAATATGGAAATTCGCTGCCATTTCGAATTCTGGAGAGAGA-GTTTTCACGTGGAA 233
                            * * *     **** * * **   *  * *    *  *  ***   ********

consensus_2879#0      A-GTTCGTGCAGTTTGCGAAGAAAAATAATCGCAATTCGAAATGGCAGCGAATTTCCATA 287
consensus_2879#1      GTGTTGGCACGATGTATAAAAAAAAAAAA---------GGAGTGGAAA--AATTTCTAAG 282
                        *** *  *  * *   ** ***** **         * * *** *   ****** *  

consensus_2879#0      TTCGCAATTACTTTTTATTATTGCTTCCACATCCGTGACACCGGTG-GATATATCAAAAG 346
consensus_2879#1      AATACA--CGCTCGATGTTGCAACATTAATA-CGATGTCAAAGGTAAGATTAATCGTTGG 339
                          **    **   * **    * *  * * *  ** **  ***  ***  ***    *

consensus_2879#0      -ATGACAGTTGCGAGCGGCCGACGCTCGAAACGATACGCGAGCCACTGAAGAGAAGGGAG 405
consensus_2879#1      CGCGATAGAGAAAAAAAAAAAAAGTATGGAA--GTGGAGGATTTTTTATTCCAATTCTAC 397
                         ** **     *       * *   * **   *    **     *      *    * 

consensus_2879#0      GATCCTTTGCCCGGGGAAGCGGACGAGNAGTGGTAAGCAAGAAGATGAGAGTCCGTGAAA 465
consensus_2879#1      AAATTTTTCGATGGCAATACAGAAAAGC--TGGTAA--TAATTGACGAAA--CCGTGGAA 451
                       *   ***    **  *  * **  **   ******   *   ** ** *  ***** **

consensus_2879#0      GTTGAAGTAAAAACCTACACAACGAATAGCAACAGTCTGCCTCGTCCATTGCGACCAGCC 525
consensus_2879#1      ATCCGAG---AATCCTAGTTGAATTCTAGTAAT--TTTTTCTCGCCAACGGGGGGAAAAT 506
                       *   **   ** ****    *    *** **   * *  **** * *  * *   *   

consensus_2879#0      ACATATCTC----- 534
consensus_2879#1      TGGTATTACCGATA 520
                         ***  *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)