cluster # 290

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Apis mellifera
cluster # 290 cluster # 290 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_290#0 length = 699 sequences # 2
consensus_290#1 length = 513 sequences # 1

consensus_290#2 length = 429 sequences # 1
consensus_290#3 length = 370 sequences # 1

consensusID : consensus_290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTACCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCGTGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACCGGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAAGGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGACGGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCACATTGGGAGGCGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTTGGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA]

[+] EMBL BI510451             [AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTACCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCGTGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACCGGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAAGGTCGAGACA                                                                                                                                                                                                                  ]
[+] EMBL BI505569             [                                                                                                                                                                                                                                                       ATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGGCTCGCACATACACGTGCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACCGAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTTGCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGGACACCAAGGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGACGGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCACATTGGGAGGCGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTTGGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA]




>consensus_290#0
AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAG
TTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTA
CCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCG
TGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACC
GGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGT
GCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACC
GAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTT
GCCAAGCCCTGTGCCCAACGGCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAAG
GTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGACG
GTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCACA
TTGGGAGGCGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTTGGT
GGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA

consensusID : consensus_290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [TTAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAGGCTCCAATGCGATTCTTCATTTTCTGTATATCTGTGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAGAGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAAAAAGGAAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGNGACACACGCATCATCCCCATCCGTCA]

[+] EMBL BI515081             [TTAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAGGCTCCAATGCGATTCTTCATTTTCTGTATATCTGTGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAGAGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAAAAAGGAAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGNGACACACGCATCATCCCCATCCGTCA]




>consensus_290#1
TTAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAAT
CGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCG
GTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTA
GACACCCATCGCGTTCACCGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAGGCT
CCAATGCGATTCTTCATTTTCTGTATATCTGTGGTATTTGATGGGGAAATTTTTCCTCGA
ACGTTCGAAGAGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAA
AAAAAAGGAAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCAT
CACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAG
ATTCAGNGACACACGCATCATCCCCATCCGTCA

consensusID : consensus_290#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [ATGACAAACGAAGGCAAAGAGAACCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGGTACAAGACAGCAA]

[+] EMBL BI511644             [ATGACAAACGAAGGCAAAGAGAACCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGGTACAAGACAGCAA]




>consensus_290#2
ATGACAAACGAAGGCAAAGAGAACCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAA
AAAAAAAAAAGAAAAATCCCTCGACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGT
ATGTTCGTTTAGATGGAGCTTCAGGACGTCGTGGTTAGCGACTCGCGTGCCGGTAGCCTC
GAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCA
TCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGT
CATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAG
AGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGGTACA
AGACAGCAA

consensusID : consensus_290#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGACGAGCCCAGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTT]

[+] EMBL BI504694             [CTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACACCCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGACGAGCCCAGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTGGAGCAACGTT]




>consensus_290#3
CTCGAGAGTCTCACCCACACCGGCAAAAGACTTCATCCACCTGTGCAGCCAGTTAGACAC
CCATCGCGTTCACCGAGTCTAAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCAC
GGTCATTATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATT
CAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGGCACAGGATGCGAGAC
TATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGACGAGCCCAGCG
AGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAGTTTG
GAGCAACGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_290#1      ------------------------------------------------------------
consensus_290#2      -------------------------------------ATGACAAACGAAGGCAAAGAGAA 23
consensus_290#3      ------------------------------------------------------------
consensus_290#0      AGCGAGGACGCCGAGCCCGATACACCACATCGACCGTGGCCGCCATTACGGGACGACCAG 60
                                                                                 

consensus_290#1      -----------------------------TTAAAAAAAAAAAAAAAAGAAAAATCCCTCG 31
consensus_290#2      CCGGCGACACCCCCATCTCTCCTTAAAAAAAAAAAAAAAAAAAAAAAGAAAAATCCCTCG 83
consensus_290#3      ------------------------------------------------------------
consensus_290#0      TTTGGAGCAACGTTCGAGGAGTCCAAGCCCGATCGGTGGTCGCCAGCCGCCCCACACTTA 120
                                                                                 

consensus_290#1      ACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCA 91
consensus_290#2      ACAAAATCCCGGGACACGAGATCCCTAATCGGCGAGTATGTTCGTTTAGATGGAGCTTCA 143
consensus_290#3      ------------------------------------------------------------
consensus_290#0      CCAGCACTATCATCGGCATCATCCCCATCAGCACAGTTACCCGGTGCTGGTGACGAGGCG 180
                                                                                 

consensus_290#1      -GGACGTCGTGGTTAGCGACTCGCGTGCCGGTAG----CCTCGAGAGTCTCACCCACACC 146
consensus_290#2      -GGACGTCGTGGTTAGCGACTCGCGTGCCGGTAG----CCTCGAGAGTCTCACCCACACC 198
consensus_290#3      ---------------------------------------CTCGAGAGTCTCACCCACACC 21
consensus_290#0      TGGGCGTGGCCGTCGATTACCCCCAACCCCGAACAAACCCTCGACACTTCAGCTGAAACC 240
                                                            ***** * *    *  * ***

consensus_290#1      GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 198
consensus_290#2      GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 250
consensus_290#3      GGCAAAAG---ACTTCATCCACCTGTGCAGCCAGT-TAGACACCCATCGCGTTCAC---- 73
consensus_290#0      GGCCAACATCAATTTCCCTAAATTGAACGCCTCGCCTACCCACGNNNCGCACATACACGT 300
                     *** **     * ***    *  **  *  *  *  **  ***    ***    **    

consensus_290#1      -CGAGTCTAAGGTGATTGTTAATTATAGACAGGTAACGAG-GCTCCAATGCGATTCTTCA 256
consensus_290#2      -CGAGTCTAAGGAGGCACTC-------GCCAGG----GAG-ACCTGGATACGAT-CATCA 296
consensus_290#3      -CGAGTCTAAGGAGGCACTC-------GCCAGG----GAG-ACCTGGATACGAT-CATCA 119
consensus_290#0      GCCGATCCCGGCCGGTATGCAGCATCCGCCACCCGGCCAGCATCTGCCTCCCATGCAACC 360
                      *   **   *  *             * **       **        * * ** *  * 

consensus_290#1      TTTTCTGTATATCTG------TGGTATTTGATGGGGAAATTTTTCCTCGAACGTTCGAAG 310
consensus_290#2      CGGTCATTATTACCA------CGAAGGACCAGGGTTTAGCGATACGGTTAGCAA-CGTCG 349
consensus_290#3      CGGTCATTATTACCA------CGAAGGACCAGGGTTTAGCGATACGGTTAGCAA-CGTCG 172
consensus_290#0      GAGCCACTGCCCCCTAAGCTTCGAGCAAGCGGTGGCGATGGGCCGGGGTGGCCGCCTCTT 420
                         *  *    *         *          *   *             *   *    

consensus_290#1      AGGAAAGTAATAAAATGACACCACGAGATCATATATCATGGCGTAAAAAAAAA-AA-AGG 368
consensus_290#2      TCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGG-CACAGG 408
consensus_290#3      TCGAGATTCAGAGACACACGCATCATCCCCATCCGTCACAGTACAATCATCGG-CACAGG 231
consensus_290#0      GCCAAGCCCTGTGCCCAACG-GCTACAAACCGCAGCCACAGGCCAAGCAGAGNACACCAA 479
                        *             **          *      **  *   **  *      *    

consensus_290#1      AAATGGTGGATTTTTCAGGAGGCACTCGCCAGGGAGACCTGGATACGATCATCACGGTCA 428
consensus_290#2      ATGCGAGGTACAAGACAGCAA--------------------------------------- 429
consensus_290#3      ATGCGA--GACTATTACGACCACTGCGACTATTACGACGATGGTCCGTGGAGCGCTTCGA 289
consensus_290#0      GGTCGAGACACTCGGACAGCGACGAGGACGACTGGTGCTAGCCAAAGTGGGACCCTGGAC 539
                         *    *                                                  

consensus_290#1      TT-ATTACCACGAAGGACCAGGGTTTAGCGATACGGTTAGCAACGTCGTCGAGATTCAGN 487
consensus_290#2      ------------------------------------------------------------
consensus_290#3      CG-AGCCCAGCGAGGACGCCGAGCCCGAT-ACACCACATCGACCGTGGCCGCCATTACGG 347
consensus_290#0      GGTGGTCCGGTGACGTGGACGCCCCCAGGCGTCTTAGGGTTTGCGCGTGAATTCTTCCAC 599
                                                                                 

consensus_290#1      GACACACGCATCATCCCCATCCGTCA---------------------------------- 513
consensus_290#2      ------------------------------------------------------------
consensus_290#3      GACGACCAGTTTGGAGCAACGTT------------------------------------- 370
consensus_290#0      ATTGGGAGG--CGCAGCAATTATTAAACCGTGAAAAACGCAAGTGCGACTCGACTGGCTT 657
                                                                                 

consensus_290#1      ------------------------------------------
consensus_290#2      ------------------------------------------
consensus_290#3      ------------------------------------------
consensus_290#0      GGTGGACTATCCGGGGAGAACTGTTATCCTGTCTGAAAAAAA 699

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)