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Apis mellifera
cluster # 2932 cluster # 2932       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2932#0 length = 543 sequences # 1  
 consensus_2932#1 length = 413 sequences # 1  
consensusID : consensus_2932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence 
                              [CATTTACTTGTAAATAGTGTATAATGATTCGAAAAAGTCTATATCATATATTAGATATAAAAAAATTATCAATTATTAATATAATTTAACACACATATTTTTAGGAATTAAGGAACGTAACGAATAGTATTTTTTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGAGCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTATACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAAGAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTATTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTGTGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATGAAGTAGNGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTACATGGTCTGTTATT]

[+] EMBL BI511005             [CATTTACTTGTAAATAGTGTATAATGATTCGAAAAAGTCTATATCATATATTAGATATAAAAAAATTATCAATTATTAATATAATTTAACACACATATTTTTAGGAATTAAGGAACGTAACGAATAGTATTTTTTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGAGCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTATACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAAGAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTATTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTGTGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATGAAGTAGNGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTACATGGTCTGTTATT]




>consensus_2932#0
CATTTACTTGTAAATAGTGTATAATGATTCGAAAAAGTCTATATCATATATTAGATATAA
AAAAATTATCAATTATTAATATAATTTAACACACATATTTTTAGGAATTAAGGAACGTAA
CGAATAGTATTTTTTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGA
GCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTAT
ACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAA
GAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTA
TTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTG
TGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATG
AAGTAGNGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTACATGGTCTGTT
ATT

consensusID : consensus_2932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence 
                              [TTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGAGCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTATACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAAGAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTATTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTGTGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATGAAGTAGAGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTAAAAAAAAAAAAAAAAAA]

[+] EMBL BI508060             [TTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGAGCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTATACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAAGAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTATTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTGTGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATGAAGTAGAGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTAAAAAAAAAAAAAAAAAA]




>consensus_2932#1
TTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGAGCAAAAAACAACG
TATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTATACAAGGTGTACCT
GAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAAGAAAATTTCAATA
TCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTATTTATAAAAACGT
TGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTGTGTGCACGCGCGC
ATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATGAAGTAGAGGATGT
TCTTTTAATTATAAAAATATAGTTGATTATACTTTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2932#0      CATTTACTTGTAAATAGTGTATAATGATTCGAAAAAGTCTATATCATATATTAGATATAA 60
consensus_2932#1      ------------------------------------------------------------
                                                                                  

consensus_2932#0      AAAAATTATCAATTATTAATATAATTTAACACACATATTTTTAGGAATTAAGGAACGTAA 120
consensus_2932#1      ------------------------------------------------------------
                                                                                  

consensus_2932#0      CGAATAGTATTTTTTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGA 180
consensus_2932#1      -------------TTGTCTAATATGAGAAAGCAATTTTTAGAGAAATGCCTGATTGTAGA 47
                                   ***********************************************

consensus_2932#0      GCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTAT 240
consensus_2932#1      GCAAAAAACAACGTATTTTTAATAAGTTATTAGTTGTGTGCGCGCGCGACTCTTTTGTAT 107
                      ************************************************************

consensus_2932#0      ACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAA 300
consensus_2932#1      ACAAGGTGTACCTGAATGAGTGAGCGAGTGAAAAATGTATGTGTATAATCTTTGTGTAAA 167
                      ************************************************************

consensus_2932#0      GAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTA 360
consensus_2932#1      GAAAATTTCAATATCGTTTAAATCAAAATGGTTTAAACGAAGTTTTCGAGATTTGTTTTA 227
                      ************************************************************

consensus_2932#0      TTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTG 420
consensus_2932#1      TTTATAAAAACGTTGATCGTCGTTTGTTTTGAAATTTATGTACGTGTTCTACGTATGTTG 287
                      ************************************************************

consensus_2932#0      TGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATG 480
consensus_2932#1      TGTGCACGCGCGCATACTCTTTACGCGCGCGCGGTATCAATACAGTAATAATACTACATG 347
                      ************************************************************

consensus_2932#0      AAGTAGNGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTACATGGTCTGTT 540
consensus_2932#1      AAGTAGAGGATGTTCTTTTAATTATAAAAATATAGTTGATTATACTTTAAAAAAAAAAAA 407
                      ****** ****************************************** *         

consensus_2932#0      ATT--- 543
consensus_2932#1      AAAAAA 413
                      *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)