cluster # 2948

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2948 cluster # 2948 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2948#0 length = 539 sequences # 1

consensus_2948#1 length = 488 sequences # 1

consensusID : consensus_2948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [TCCAAATATCCAATATTGTTTATTTCCTTTTTTATCCTACTCGTTTTCTTTTCTTTTCTTTTTTTTTTGTTCTTCGAAACGAAATCATGCCTCGATCAATGCGAGCTTTCACGACCGTGCCGTATGTTTTTAAATATATATATATATATATATATATATATATATATATACCTTTGAAATATTGCGAATTCGTTACTCTCTGGAGTCAATGGAGTATAGTCCATTGTCGTGAACATATCTTGACGCGTAAACTTATTATTATTCCCTGAGACGATCGAGCAAAAAATGTTTANNNAGATCGATTGCCTCTTTGGAACATGGAATGCGAATAAGATAAGGGAAAGATCTTGTTCGATTATCATTTAAAAGTTTCGTTTAAAAAAGGTAGGAATGGAAAAGCGTGTACATCCAAAGAGGCAACAGGAAGAAAATATATCGAATCGAACGGTCGGTTGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGA]

[+] EMBL BI512477             [TCCAAATATCCAATATTGTTTATTTCCTTTTTTATCCTACTCGTTTTCTTTTCTTTTCTTTTTTTTTTGTTCTTCGAAACGAAATCATGCCTCGATCAATGCGAGCTTTCACGACCGTGCCGTATGTTTTTAAATATATATATATATATATATATATATATATATATATACCTTTGAAATATTGCGAATTCGTTACTCTCTGGAGTCAATGGAGTATAGTCCATTGTCGTGAACATATCTTGACGCGTAAACTTATTATTATTCCCTGAGACGATCGAGCAAAAAATGTTTANNNAGATCGATTGCCTCTTTGGAACATGGAATGCGAATAAGATAAGGGAAAGATCTTGTTCGATTATCATTTAAAAGTTTCGTTTAAAAAAGGTAGGAATGGAAAAGCGTGTACATCCAAAGAGGCAACAGGAAGAAAATATATCGAATCGAACGGTCGGTTGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGA]




>consensus_2948#0
TCCAAATATCCAATATTGTTTATTTCCTTTTTTATCCTACTCGTTTTCTTTTCTTTTCTT
TTTTTTTTGTTCTTCGAAACGAAATCATGCCTCGATCAATGCGAGCTTTCACGACCGTGC
CGTATGTTTTTAAATATATATATATATATATATATATATATATATATATACCTTTGAAAT
ATTGCGAATTCGTTACTCTCTGGAGTCAATGGAGTATAGTCCATTGTCGTGAACATATCT
TGACGCGTAAACTTATTATTATTCCCTGAGACGATCGAGCAAAAAATGTTTANNNAGATC
GATTGCCTCTTTGGAACATGGAATGCGAATAAGATAAGGGAAAGATCTTGTTCGATTATC
ATTTAAAAGTTTCGTTTAAAAAAGGTAGGAATGGAAAAGCGTGTACATCCAAAGAGGCAA
CAGGAAGAAAATATATCGAATCGAACGGTCGGTTGACGAATGATGACGTATTAAACGTAA
TCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGA

consensusID : consensus_2948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGATATGTGCGTAACACGAACCTCTGTCTTCCAAACGTGTATTAAAGTTGAACTTTCGTGTGTATTATGTATACGTATATGTATACATATTTAACTACGTGTATACATTTATACAATACACATGTATTGCACATATGCGTATATTTATGAATATGTATACACTCATATGCTATGTACACGAACACATGACACATACGCGTAAACACACACACACACACACACACATATATATACACAATATTTAATATATTTGGAGAACGAGAGAGAGAGAGAGTGGGGAAAAAGAGAGAAAGAGAGAGAAAGAAAGAATGATATTATGGATATCGTATGTCTCACTTCCGTAACAAAATCGACATGATCGCACTTGATTCACGATGTTACGTCGGCAGAAAAAAAAGGAATGTG]

[+] EMBL BI507982             [TGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGATATGTGCGTAACACGAACCTCTGTCTTCCAAACGTGTATTAAAGTTGAACTTTCGTGTGTATTATGTATACGTATATGTATACATATTTAACTACGTGTATACATTTATACAATACACATGTATTGCACATATGCGTATATTTATGAATATGTATACACTCATATGCTATGTACACGAACACATGACACATACGCGTAAACACACACACACACACACACACATATATATACACAATATTTAATATATTTGGAGAACGAGAGAGAGAGAGAGTGGGGAAAAAGAGAGAAAGAGAGAGAAAGAAAGAATGATATTATGGATATCGTATGTCTCACTTCCGTAACAAAATCGACATGATCGCACTTGATTCACGATGTTACGTCGGCAGAAAAAAAAGGAATGTG]




>consensus_2948#1
TGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATGTTTACGCGTGTTC
GGCAGGAATAAACTTACAATTAGAGATATGTGCGTAACACGAACCTCTGTCTTCCAAACG
TGTATTAAAGTTGAACTTTCGTGTGTATTATGTATACGTATATGTATACATATTTAACTA
CGTGTATACATTTATACAATACACATGTATTGCACATATGCGTATATTTATGAATATGTA
TACACTCATATGCTATGTACACGAACACATGACACATACGCGTAAACACACACACACACA
CACACACATATATATACACAATATTTAATATATTTGGAGAACGAGAGAGAGAGAGAGTGG
GGAAAAAGAGAGAAAGAGAGAGAAAGAAAGAATGATATTATGGATATCGTATGTCTCACT
TCCGTAACAAAATCGACATGATCGCACTTGATTCACGATGTTACGTCGGCAGAAAAAAAA
GGAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2948#0      TCCAAATATCCAATATTGTTTATTTCCTTTTTTATCCTACTC-GTTTTCTTTTCTTTTCT 59
consensus_2948#1      -------------TGACGAATGATGACGTATTAAACGTAATCTGCACGCGAGCGTATATG 47
                                   *   *  *  *  * * ** * * ** ** *    *     * *   

consensus_2948#0      TTTTTTTTTGTTCTTC-GAAACGAAATCATGCCTCGATCAATGCGAGCTTTCACGACCGT 118
consensus_2948#1      TTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGAGATATGTGCG-TAACACGAACCT 106
                      ***     *****  * * **  ** * *    * **   *** * * *  ***** * *

consensus_2948#0      GCCGTATGTTTTTAAATATATATATATATATATATATATATATATATATATACCTTTGAA 178
consensus_2948#1      -CTGT---CTTCCAAACGTGTAT-TAAAGTTGAACTTTCGTGTGTAT-TATGTATACGTA 160
                       * **    **  ***  * *** ** *  *  *  *   * * *** ***   *  * *

consensus_2948#0      ATATTGCGAATTCGTTACTCTCTGGAGTCAATGGAGTATAGTCCAT-TGTCGTGAACATA 237
consensus_2948#1      TATGTATACATATTTAACTACGTGTATACATTT--ATACAATACACATGTATTGCACATA 218
                          *    **   * ***   ** *  ** *    ** * * **  ***  ** *****

consensus_2948#0      TCTTGACGCGTAAACTTATTATTATTCCCTGAGACGATCGAGCAAAAAATGTTTANNNAG 297
consensus_2948#1      T------GCGTATATTTATGAATATGT----ATACACTC----ATATGCTATGTACACGA 264
                      *      ***** * **** * ***      * **  **    * *   * * **     

consensus_2948#0      ATCGATTGCCTCTTTGGAACATGGAATGCGAATAAGATAAGGGAAAGATCTTGTTCGATT 357
consensus_2948#1      ACACATGACACATACG---CGTA-AACACACACACACACACACACACATAT-ATATACAC 319
                      *   **  *   *  *   * *  **  *  * *     *   * * ** *  *      

consensus_2948#0      ATCATTTAAAAGTTTCGTTTAAAAAAGGTAGGAATGGAAAAGCGTGTACATCCAAAGAGG 417
consensus_2948#1      AATATTTAATATATTTGGAGAACGAGAGAGAGAGAGAGTGGGGAAAAAGAGAGAAAGAGA 379
                      *  ****** *  ** *   **  *  *   **  *     *     * *   ****** 

consensus_2948#0      CAACAGGAAGAAAATATATCGAATCGAACGGTCGGTTGACGAATGATGACGTATTAAACG 477
consensus_2948#1      GAGAAAGAAAGAATGATATTATGGATATCGTATGTCTCACTTCCG-TAACAAAATCGACA 438
                       *  * ***  **  ****       * **   *  * **    * * **  * *  ** 

consensus_2948#0      TAATCTGCACGCGAGCGTATATGTTTACGCGTGTTCGGCAGGAATAAACTTACAATTAGA 537
consensus_2948#1      TGATC-GCACTTGATTCACGATGTT-ACG-----TCGGCAGAAAAAAAAGGAATGTG--- 488
                      * *** ****  **      ***** ***     ******* ** ***   *   *    

consensus_2948#0      GA 539
consensus_2948#1      --

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)