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Apis mellifera
cluster # 318 cluster # 318       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_318#0 length = 627 sequences # 4  
 consensus_318#1 length = 338 sequences # 1  
consensusID : consensus_318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 627
fasta sequence 
                              [AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCTTTATTCTCTCAGCGCAAAATCAT]

[+] EMBL BI514171             [AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAG                                                                                                                                                 ]
[+] EMBL BI516790             [ AAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGNGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATG                                                                                                                                                                                          ]
[+] EMBL BI513971             [                                                                                            AGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCTTTATTCTCTCAGCGCAAAATCAT]
[+] EMBL BI513884             [                                                                                            AGACGGGGCAGACGAGAGCATTGAGAACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGAATCT                       ]




>consensus_318#0
AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGC
TAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGAAC
GTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGCCC
TGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAA
AGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATAGA
GCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTAAA
CGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGAAT
CTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTTTG
AGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAATAA
ATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAAGA
ATCTTTATTCTCTCAGCGCAAAATCAT

consensusID : consensus_318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence 
                              [AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGTGTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTTCGTCCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATAGAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA]

[+] EMBL BI504059             [AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAAGCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGTGTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATATCCTTCTTTCGTCCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATAGAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA]




>consensus_318#1
AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAA
GCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGTGTGTATA
TTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGCCCTGTGAAA
ACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATAAAAGTATAT
CCTTCTTTCGTCCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATAGAGCACAGAT
ACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_318#0      --AAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAA 58
consensus_318#1      AAAAAAGAAGAAACCTTTCCTTTCGAAAGATTGATACGATCAAATTCTACTGACCTAGAA 60
                       **********************************************************

consensus_318#0      GCTAGATCACGCTAATTGAATGGAAGGGGATCGTAGACGGGGCAGACGAGAGCATTGAGA 118
consensus_318#1      GCTAGATCACGCTAATTGAATGGAAAGGGATCGTAGACGGGGCAGACGAAAGT------- 113
                     ************************* *********************** **        

consensus_318#0      ACGTGTATATTATAGGTGAACGCGGTTGGCAATATTTCGTCTCGAATTCGATTTCTCTGC 178
consensus_318#1      --GTGTATATTATAGGTGAACGCGGTTGGTAATATCTCGTCTCGAATTCGATTTCTCTGC 171
                       *************************** ***** ************************

consensus_318#0      CCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATA 238
consensus_318#1      CCTGTGAAAACGAACGAAGGAATTTCGTGTGATCGATTGTTGCGTTCATCATCAGGGATA 231
                     ************************************************************

consensus_318#0      AAAGTATATCCTTCTTCGATTCCCTCTCGACTCGAGCGTTCCAAGCATTACATGCGAATA 298
consensus_318#1      AAAGTATATCCTTCTTTCGT-CCCTCTCGACTCGAGCATTCCAAGCATTACGTGCGAATA 290
                     ****************   * **************** ************* ********

consensus_318#0      GAGCACAGATACTTTCTTAATTAATTTTCTATGCGGCCATTCGAATCATCGACACGCTTA 358
consensus_318#1      GAGCACAGATACTTTCTTAATTAATTTCCTATGCGGCCATTCGAAAAA------------ 338
                     *************************** *****************  *            

consensus_318#0      AACGCTGGATTTAAATCGAATTCTTTCGATGTATAATCGAGAGGGGGATTGATTCAACGA 418
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      ATCTTTCTCTTTTTGAAAATATGCTGAAGGAGGAACGAAGACTCTCCCTGCAAATTTCTT 478
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      TGAGAATTTTTCGGGAGATCGGTCAAGAGACAATCGAACGAGGCTGATTAAATCAATAAT 538
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      AAATAACGACGATAATCAAAAATATCTAATTTTTATCTGATTTACTTCTGCGTCTCCGAA 598
consensus_318#1      ------------------------------------------------------------
                                                                                 

consensus_318#0      GAATCTTTATTCTCTCAGCGCAAAATCAT 627
consensus_318#1      -----------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)