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Apis mellifera
cluster # 319 cluster # 319       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_319#0 length = 583 sequences # 4  
 consensus_319#1 length = 383 sequences # 1  
consensusID : consensus_319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 583
fasta sequence 
                              [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC]

[+] EMBL BI504301             [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC]
[+] EMBL BI504058             [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC]
[+] EMBL BI504574             [ATTGTGATTTC AAGGCGTGGAAANT NATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATT                                                        ]
[+] EMBL BI508513             [ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTCGATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGAATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACACTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGACTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCTCTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTAT                                                             ]




>consensus_319#0
ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTC
GATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGA
ATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACA
CTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGA
CTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCT
CTAAATATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCACA
GACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTCGA
AGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATC
GATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAAC
GAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC

consensusID : consensus_319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence 
                              [CAATATAGGGGAATACGATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTGCTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATCTATATT]

[+] EMBL BI508692             [CAATATAGGGGAATACGATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTGCTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATCTATATT]




>consensus_319#1
CAATATAGGGGAATACGATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATA
TTACATTAAGAAATTCACAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCAC
TACAACAATTAGTATTCGAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTT
AGCATCAATTTTTGCCATCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTA
TCGATTCACGCGCAGCAACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGC
GCAAGTAACACCCTGTGCTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCG
CCGCGAGCCGCAAAATCTATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_319#0      ATTGTGATTTCGAAGGCGTGGAAAATCAATTTCAATATAGGGGAATACGATTGCTTGGTC 60
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GATATTCTGCTTAACAATAATGCGACACGATTAAGATGATAAGTTGAAAAATAACACGGA 120
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      ATAAGTTACATTTTCTCTCGCGAGAAAATTAATTTAACCGAATAAATTAATTGAAAAACA 180
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CTTTCAACAGGCTTATACTCTTACTTATAAGTCTAAGAATATTCTAGATACTATTATAGA 240
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CTAACAATAAAACAAATCGTTTTCACGATTACTTGAAAATGATTGATACTTATTAACCCT 300
consensus_319#1      -------------------------------------------CAATATAGGGGAATACG 17
                                                                  ***      **  * 

consensus_319#0      CTAAAT--ATTGAAAAATCCTTTAAAAAAATTATTCCACGATATTACATTAAGAAATTCA 358
consensus_319#1      ATTGTTTGGTCGATATTCTGCTTAACAATAATGCGACACGATATTACATTAAGAAATTCA 77
                      *   *   * ** *      **** ** * *    ************************

consensus_319#0      CAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTACTC 418
consensus_319#1      CAGACAATTCACAAAGGAACGAATAGAACTAATCGAAAATCACTACAACAATTAGTATTC 137
                     ********************************************************* **

consensus_319#0      GAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCA 478
consensus_319#1      GAAGATGCCGAGATTCAAGGGGTGTGTGAAAATATTATATTTTAGCATCAATTTTTGCCA 197
                     ************************************************************

consensus_319#0      TCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCA 538
consensus_319#1      TCGATTTCAGGGGTGAAGGTTCGCCTGTCCTGCGCCACTCGTATCGATTCACGCGCAGCA 257
                     ************************************************************

consensus_319#0      ACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGC--------------- 583
consensus_319#1      ACGAGGCCGCGAAAAAACTACTGTTACTTGTTTCACCATCTGCGCAAGTAACACCCTGTG 317
                     *********************************************               

consensus_319#0      ------------------------------------------------------------
consensus_319#1      CTCCTTTGCGTAATCACAGGGATGAATTTCCCGTTTGAGCTCGCCGCGAGCCGCAAAATC 377
                                                                                 

consensus_319#0      ------
consensus_319#1      TATATT 383


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)