|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1016 fasta sequence
[ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG----ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA]
[+] EMBL BI509348 [ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAAGAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTTCTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAAGCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGGGAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCGGATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCT ]
[+] EMBL BI503382 [ AAGCTTTAACTTTGACTAAACTAACTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGTTGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGNTCATATATATATATGATATATACAG ATATATAT ]
[+] EMBL BI509353 [ ATTCTGCGCGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATGATATATACAG ATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACG AAAAAAAAAGAAAGAAACATTGAAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTC ]
[+] EMBL BI505334 [ ttcatATATATATATATGATATATACAGATATATATATATATATATATATATATAGTTTAATCTACCTCGATGTAATACACTCGTGTTGGCAAGCATCGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTGGCCAAAACTATATAAGTATATGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAAAAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACAATAATGTTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA]
consensusID : consensus_338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA]
[+] EMBL BI505978 [CGAAATCATTACCGACGATCGATAAAAATGCGTTCATATATATATATATGATATATACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTCTTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTATTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACATATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGCAGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTCGCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGTGAAATCGAACGTTTGTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_338#0 ACGGTATAAATTTTATAATGTTAATATTACAATCCAATGCGCGTTTGAAACATTTATAAA 60
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GAATAAAAATCGAAAACGTTCACACACGAGATATAGAAACCGACCGTAGGACGGTCTCTT 120
consensus_338#1 ------------------------------------------------------------
consensus_338#0 CTGTAAAACCATCGACATTTTATTTTAAACGCACGAATTTCCGAAAAGCTTCATTCCAAA 180
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GCTTTCCGAGGAGAGAAAGAGGGGGAAAAAAAGAAGAAAAAGAAAACATTATGTAAAGGG 240
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GAAGGGAAAAGAAGTAAAAAAAAAAAAAACCATTGAAAGCTTTAACTTTGACTAAACTAA 300
consensus_338#1 ------------------------------------------------------------
consensus_338#0 CTTTAAAAAAAAGGGTATATAGCGATATAATAATAATAGCAGTGAGTGCTGCTAACCAGT 360
consensus_338#1 ------------------------------------------------------------
consensus_338#0 TGTGTGAATGGCGGATGATTGGCNNATTGATTCTGCGCGAAATCATTACCGACGATCGAT 420
consensus_338#1 CGAAATCATTACCGACGATCGATAAA---AATGCGTTC-ATATATATATATATGATATAT 56
* ** * ** *** * * * * * * * ** ** * *** **
consensus_338#0 AAAAATGCGTTCATATATATATATG-ATATATACAGATATATATATATATATATATATAG 479
consensus_338#1 ACAGATATATATATATATATATATATATATATATATATATATATATATATATATATATAN 116
* * ** * ************ ******* * ***********************
consensus_338#0 TTTAATCTACCTCGATGTAATACACTCGTGTTGACAAGCATCGAAATATCCAGTTCTTTC 539
consensus_338#1 NNTAATCTACCTCGATGTAATACACTCGTGTNNGCAAGCATAGAAATATCCAGTTCTTTC 176
***************************** ******* ******************
consensus_338#0 TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 599
consensus_338#1 TTTACGATTTCGCGGATATATATATCTGTTTCGCGCAATATCCCGCCAATCTTCGCGTTA 236
************************************************************
consensus_338#0 TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 659
consensus_338#1 TTGTAAACTTATTGTATATTACTTATACATATATACATACATATATATGTATATATACAT 296
************************************************************
consensus_338#0 ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 719
consensus_338#1 ATACATAGATGTGTGCATATGTGAAAATGCAAAGGAACACTTGTTTTTCTCAAAGAAAGC 356
************************************************************
consensus_338#0 AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTGTTCGCGTGCATCGTTCGCGTC 779
consensus_338#1 AGATCGAGTGGAGATTGTACCTTTATACGTATTTCATTNTTCGCGTGCATCGTTCGCGTC 416
************************************** *********************
consensus_338#0 GCGTCGAGAACACGGACGACGATTGGCCAAAAGTATATAAGTATATGAAATCGAACGTTT 839
consensus_338#1 GCGTCGAGAACACGGACGACGATTNNCCAAAAGTATATAAGT----GAAATCGAACGTTT 472
************************ **************** **************
consensus_338#0 GTCGAATGGGGAACCAGTCCTTCTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 899
consensus_338#1 GTCGAATGGGGAACCAGTCCTNNTTTATCGATCGAAACGACATTTTTATCGACGAAAAAA 532
********************* *************************************
consensus_338#0 AAAAAAGAAAGAAACATTGGAGGAAACGTATTTCTATAATAAGAAGCGCGTTTACGAACA 959
consensus_338#1 ------------------------------------------------------------
consensus_338#0 ATAATNNTCATTCATAACCATTCACGACTGACGAACGAATTTCTTCTCGTAGATAAA 1016
consensus_338#1 ---------------------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |