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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 545 fasta sequence
[ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA]
[+] EMBL BI512837 [ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGGTTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGCAGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCTTCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTataa ]
[+] EMBL BI503022 [ GGTGTATACGTGTGCGAGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTAAAAAAAA ]
[+] EMBL BI513986 [ ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAAA]
[+] EMBL BI514073 [ ATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGATGCATGATCGAATATCATCTTTTTACAATCGCAACCGTTATTAACATTATAATATAAATAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTNNNAAAA ]
consensusID : consensus_357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA]
[-] EMBL BI513354 [TTACTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGTATAATATTTCGAATAAATGACAATGTTCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTATATTAACCTCTTGCATAATCAATATGATTTAAATAAATGACTAAAATATTTTCGATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTATTATAATTGGTTATTGAAAAAAATGAAAAAAATTAAATCAAAATCATAAATGTAATATCTATTCAAATTTATATACAGTTTTTCTATTTCAAAAATTATCATTATTCGAGATTACAATAAATTGTTTCCTGCAATATAATAATGATAAATAAAATAAAATTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_357#0 ACAATACGTTGTCATCATACGTTCGACGATAGAGAGCGAAGGGACAAGGGGTGCGACGGG 60
consensus_357#1 ----------------TTACTTTTAATTA----ACTTATAAACATAAAAAGTG-AATGAA 39
*** ** * * * * ** *** * *
consensus_357#0 TTGCGAAGAGAATTATTATGTGAAATCGCGAAGACGAAGAGGATAACGAGAAGATCCAGC 120
consensus_357#1 TTTCAATTCAACGTGATAT-TGATATTTTCTTTTCACATATTTTTTCTTGAAAATAAAAT 98
** * * * * *** *** ** * * * * * *** ** *
consensus_357#0 AGAGTAAAAATTATTTCTTGTATTTTTTTTTTTTCTTTTTTTCTTAATTTCGGTCTTTCT 180
consensus_357#1 TGCGATTAAATGAGCATATAAACGTATAATATTTCG---------AATAAATGACAATGT 149
* * **** * * * * * * **** *** * * * *
consensus_357#0 TCTTTTGTTATTTTTTTCTTTTTTCTTATCTTGGCCATGTCTTCGGTGTATACGTGTGCG 240
consensus_357#1 TCGATTGAAAATTTTGTTTTCGAACATTATCTGAGCAAATTATCGATGAATTACCGATTA 209
** *** * **** * ** * * ** ** * *** ** ** *
consensus_357#0 AGTGCAAGTGAGGTTATAATCGGTGAGAAAAGAGAAAATTACTTCGTCGAGAACGTCGAT 300
consensus_357#1 TAT-TAACCTCTTGCATAATCAATATGATTTAAATAAATGACT------AAAATATTTTC 262
* ** ****** * ** * **** *** * ** *
consensus_357#0 GCATGATCGAATATCATCTTTT-TACAATCGCAACCGTTATTAACATTAT--AATATAAA 357
consensus_357#1 GATTTTTTTCTTTTCTTTTTTTATATAATGAATTCATATTTTAATTTTATTCAAAATTAT 322
* * * * ** * **** ** *** * * **** **** ** ** *
consensus_357#0 TAATATTACATTATTTATAACGATGTTATAAGATAATATTACAATGAATAATTTAGTTTA 417
consensus_357#1 TATAATTG-GTTATTGAAAAAAATGA-AAAAAATTAAATCAAAATCATAAATGTAATATC 380
** *** ***** * ** *** * ** ** * ** * *** * *** ** * *
consensus_357#0 CTTTTAATTAACTTATAAACATAAAAAGTGAATGAATTTCAATTCAACGTGATATTGATA 477
consensus_357#1 TATTCAA---ATTTATATACA------GTTTTTCTATTTCAA----AAATTATCATTATT 427
** ** * ***** *** ** * ******* * * ** * **
consensus_357#0 TTTTCTTTTCACATATTTTTTCTTGAAAATAAAATTGCGATTAAATGAGCATATAAACGT 537
consensus_357#1 CGAGATTACAATAAATTGTTTCCTGCAA-TATAATAATGAT-AAATAAA-ATA-AAATTT 483
** * * *** **** ** ** ** *** *** **** * *** *** *
consensus_357#0 NNNAAAAA--- 545
consensus_357#1 AAAAAAAAAAA 494
*****
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |