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Apis mellifera
cluster # 396 cluster # 396       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_396#0 length = 676 sequences # 3  
 consensus_396#1 length = 578 sequences # 1  
consensusID : consensus_396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 676
fasta sequence 
                              [ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAAGAAAAAGTAGGAAAGGGAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTG]

[+] EMBL BI506330             [ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAAGAAAAAGTAGGAAAAGGAAGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCCATCAGCTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGG TTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAAT                                      ]
[+] EMBL BI510434             [                                                   AACGATAAAGAAAAAGT    AAGGAAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGA     ]
[+] EMBL BI509896             [                                                                                         CGAAAGATTGCAAACTCTCGTTCATGTAAATCGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATCAGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCTTTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGTTGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGATATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTTCACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGNNNAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTG]




>consensus_396#0
ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAA
GAAAAAGTAGGAAAGGGAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAAT
CGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATC
AGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCT
TTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGT
TGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGA
TATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTT
CACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTT
AAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGT
CTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAA
GAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCG
GAACTCGCAGATCCTG

consensusID : consensus_396#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence 
                              [GTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGATTTTCCACACGACAAAACGCAAATCGCATCCGGTCTCAGAAAAAGAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCCTTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTATAAATTCACTCATGTGAATTAAATAAATATTTTGTATATAATATATAATACATTGAGGGACTAGTTAAAGGAAACGAAGAAATATATATAAAAATATGAAATTGTCGACAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAATAAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT]

[+] EMBL BI509391             [GTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGATTTTCCACACGACAAAACGCAAATCGCATCCGGTCTCAGAAAAAGAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCCTTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTATAAATTCACTCATGTGAATTAAATAAATATTTTGTATATAATATATAATACATTGAGGGACTAGTTAAAGGAAACGAAGAAATATATATAAAAATATGAAATTGTCGACAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAATAAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT]




>consensus_396#1
GTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTTAAACGG
CTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGATTTTCCACACGACAAAACG
CAAATCGCATCCGGTCTCAGAAAAAGAACTCGGTCAAACTCGTTCTCTGTCTAAACTACA
TCCTTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTATAAATTCACTCATGTGAATTAAA
TAAATATTTTGTATATAATATATAATACATTGAGGGACTAGTTAAAGGAAACGAAGAAAT
ATATATAAAAATATGAAATTGTCGACAGAAACACTGTTATGTCTTCGCGGTAGTTCCGCG
AACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAAGAACTTCTTCACGGTGAG
CGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCGGAACTCGCAGATCCTGAA
AATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAATAAAATGAAACCATTGCCA
GAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_396#0      ACATAAATCCCTTCTTTCAAACATCAACATCCAGATAAAACGATAAAGGGAAACGATAAA 60
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      GAAAAAGTAGGAAAGGGAGGAAAAAAAAACGAAAGATTGCAAACTCTCGTTCATGTAAAT 120
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      CGTACATAATAATCGATGATCGTAAGATCGTCAGAGCCACCAGGATCAAGAGAACCAATC 180
consensus_396#1      --------GTGTCCGAAATTTAAAAGAAAG--AAGTACACAGTGATCACGGAAGCG---C 47
                              *   ***   *   ****  *  *    ***   ***** *  * *    *

consensus_396#0      AGTTCTTGATCGTCGAATACCATTTTCGCCGAGGTTCCATCTGATCAAAGTGTTATACCT 240
consensus_396#1      AATTTTTAAACGGCTGACAC-AGTGTCGT-GAGATT------GAT-AATATATCACGCTT 98
                     * ** ** * ** *  * ** * * ***  *** **      *** **  * * *  * *

consensus_396#0      TTTTGCTTCGAAAACTACTCGATTGAACTATGAATTGCATCTCGTTTAATCTGATCGAGT 300
consensus_396#1      AGATTTTCC-------ACACGACAAAAC-GCAAATCGCATCCGGTCTCA----------- 139
                        *  * *       ** ***   ***    *** *****  ** * *           

consensus_396#0      TGTTGCGTGAAGAATCAAGAGTGAACACAGTGTAGTGCGTACAATATTCTCGATTCTTGA 360
consensus_396#1      --------GAAAAA--------GAACTCGGTCAAACTCGTTCTCTGTCTAAACTACATCC 183
                             *** **        **** * **  *   *** *  * *      * * *  

consensus_396#0      TATTCTATTCGAATCCGAATTTCCCGCGCGGCTGTTTCTTCAAAACTTCCGGTTTTTTTT 420
consensus_396#1      TTTTAACCTTGAATAAGAGCTCTAGAAGAGCTTAT------AAATTCACTCATGTGAATT 237
                     * **    * ****  **  *      * *  * *      ***    *   * *   **

consensus_396#0      CACGAAGTGTCCGAAATTTAAAAGAAAGAAGTACACAGTGATCACGGAAGCGCAATTTTT 480
consensus_396#1      AAATAAATATTTTGTATATAATATATA-ATACATTGAGGGACTAGTTAAAGGAAACGAAG 296
                      *  ** * *     ** *** * * * *   *   ** **  *   **  * **     

consensus_396#0      AAACGGCTGACACAGTGTCGTGAGATTGATAATATATCACGCTTAGAAACACTGTTATGT 540
consensus_396#1      AAATAT---ATATAAAAATATGAAATTGTCGACA-----------GAAACACTGTTATGT 342
                     ***      * * *      *** ****   * *           ***************

consensus_396#0      CTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAA 600
consensus_396#1      CTTCGCGGTAGTTCCGCGAACCAATACAGGAACACGCGAGAGAAATAATCAAAAGCGGAA 402
                     ************************************************************

consensus_396#0      GAACTTCTTCACGNNGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCG 660
consensus_396#1      GAACTTCTTCACGGTGAGCGAATAAAATCATTTAAAATGACGGAAGCATCGAGAGAACCG 462
                     *************  *********************************************

consensus_396#0      GAACTCGCAGATCCTG-------------------------------------------- 676
consensus_396#1      GAACTCGCAGATCCTGAAAATCCTGACAAAACTGCATTGAATCTAACATCTGCTTCTAAT 522
                     ****************                                            

consensus_396#0      --------------------------------------------------------
consensus_396#1      AAAATGAAACCATTGCCAGAACGTGGTACATGGAGCACCAAGCTAGATTTCATTTT 578


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)