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Apis mellifera
cluster # 416 cluster # 416       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_416#0 length = 665 sequences # 3  
 consensus_416#1 length = 365 sequences # 1  
consensusID : consensus_416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 665
fasta sequence 
                              [TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATATAAAATA]

[+] EMBL BI507083             [TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTT                                                                 ]
[+] EMBL BI503978             [               TCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAA NNNATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTCTCGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAA                     ]
[+] EMBL BI509933             [                                ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAAGTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATATAAAATA]




>consensus_416#0
TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTA
CGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGG
GTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTG
GAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATG
GATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAA
GTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGAGATCGAATAATTTTGACGCC
GAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGGAT
TTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAAAA
TTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGGAC
CTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGATTT
NNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATATA
AAATA

consensusID : consensus_416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence 
                              [ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCATATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATCAATAATTTCTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA]

[+] EMBL BI509682             [ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCATATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATCAATAATTTCTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA]




>consensus_416#1
ACGCGCATTTTTACGCGAACGATTTCTACGTGTAATTACTGGAATTGTTGGCAAACAAGC
AGATTTTTATTTGTACGAAAATACGCGGGTTTCCGCCGAGTTTAGAGGTTGTGATGTGGA
ATGTTTGGAAGTATATACACGGAATTTGGAAACACCATTGGGCAAGATTCCAGAAGCTGT
TCTAAGAACAAGTGACATTATTTATATGGATATGAATGATATTAATGTAGCACAATAAAT
TTCCAAAATACAGTTCAAGATCGACGCATATTTAACATAGTGTTTATTTCTGAAATAATG
CGTCTTAAATGATCAATAATTTCTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAA
ATTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_416#0      TGGATTTNNNCAACCTCTGAAAAACAAGAAGCACGCGCATTTTTACGCGAACGATTTCTA 60
consensus_416#1      --------------------------------ACGCGCATTTTTACGCGAACGATTTCTA 28
                                                     ****************************

consensus_416#0      CGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGG 120
consensus_416#1      CGTGTAATTACTGGAATTGTTGGCAAACAAGCAGATTTTTATTTGTACGAAAATACGCGG 88
                     ************************************************************

consensus_416#0      GTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGCTTGGAAGTATATACACGGAATTTG 180
consensus_416#1      GTTTCCGCCGAGTTTAGAGGTTGTGATGTGGAATGTTTGGAAGTATATACACGGAATTTG 148
                     *********************************** ************************

consensus_416#0      GAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATG 240
consensus_416#1      GAAACACCATTGGGCAAGATTCCAGAAGCTGTTCTAAGAACAAGTGACATTATTTATATG 208
                     ************************************************************

consensus_416#0      GATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGATTGCCAAAGTTCAA 300
consensus_416#1      GATATGAATGATATTAATGTAGCACAATAAATTTCCAAAATACAGTTCAAGATCGACGCA 268
                     ********************************************* *    *  *    *

consensus_416#0      GTGGCCACGCCGAGTAAAGCTTCGACCAATCACGTCTCGA--GATCGAATAATTTTGACG 358
consensus_416#1      TATTTAACATAGTGTTTATTTCTGAAATAATGCGTCTTAAATGATC-AATAATTT----- 322
                           **   * **  *  *  **   *   *****  *  **** ********     

consensus_416#0      CCGAGCCAAAAGATGTGAAGAATTTGAAAACGGTCGATAAGGAAACGAAATTGCAAAAGG 418
consensus_416#1      -----CTTTAAGGTGCCTATTTTTTAACACCACTTGCTGAAAAATTAA------------ 365
                          *   *** **   *   *** * * *  * * * *  **   *            

consensus_416#0      ATTTTCGGAATGAAGAGAGATACAGGGAAGATTTGCAGGATTTTTCGAAGGGACGGGGAA 478
consensus_416#1      ------------------------------------------------------------
                                                                                 

consensus_416#0      AATTATCGATCGTTCGCTGCAGAGCAATCCGAGATGTTTACATACCAGAAGTGAAACGGG 538
consensus_416#1      ------------------------------------------------------------
                                                                                 

consensus_416#0      ACCTGCCAGCTGTAGCGTGTAAATTTGGGAATAACACTTTCGTTTTATCGAGCGAAAGAT 598
consensus_416#1      ------------------------------------------------------------
                                                                                 

consensus_416#0      TTNNNGAGGATCGACGATTGTATCTCGATATAAGAATCGACGAGAATATATTTGAAAATA 658
consensus_416#1      ------------------------------------------------------------
                                                                                 

consensus_416#0      TAAAATA 665
consensus_416#1      -------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)