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Apis mellifera
cluster # 42 cluster # 42       Sequences # 10       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_42#0 length = 559 sequences # 6  
 consensus_42#1 length = 434 sequences # 4  
consensusID : consensus_42#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 559
fasta sequence 
                              [GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC---TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAAAAAATGCTTCTCGAATCATCAACGATAGAAAA]

[+] EMBL BE844589             [GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC   TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAATAAATGCTTCTCGAATCATCAACGATAGAAAA]
[+] EMBL BI505344             [                                                                                                                                                                                                 tTTTTTTTTTTCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACGAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC   TTTTTTT                                                                                                                                                                                                ]
[+] EMBL BI509334             [                                                                                                                                                                                                                                                             TTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC    TTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAGAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATAT                                     ]
[+] EMBL BI506266             [                                                                                                                                                                                                                                                                CGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTCTTTTTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAAATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATAAAAAAAA                               ]
[+] EMBL BI504193             [                                                                                                                                                                                                                                                                                            TAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC   TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCAAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAAaa                                                                                              ]
[+] EMBL BI504055             [                                                                                                                                                                                                                                                                                            TAATATTCAAAGGACGACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC   TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGNNAAAGTGTGAGGTGTGTGTCAGAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAAaa                                                                                              ]




>consensus_42#0
GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTG
TAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACA
CGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCC
ATTTTCTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCACG
AAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGACG
ACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTTC
TTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTCA
AAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAAA
ATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAAAAAATGCTTCTCG
AATCATCAACGATAGAAAA

consensusID : consensus_42#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 434
fasta sequence 
                              [TTCACCGTAAAA--CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA-CCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTTTTTCTTTTTAATTGTTTAGTAAAAAAAAAAA]

[+] EMBL BI510269             [TTCACCGTAAAA  CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA   CCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTTTTTCTTTTTAATTGTTTAGTAAAAAAAAAAA]
[+] EMBL BI511630             [TTCACCGTAAAA  CCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA   CCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACACACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGCCATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTT                               ]
[+] EMBL BI505419             [      GTAAAACCCCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAAGATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGACCCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTTGTAA                                                                                                                                                                                              ]
[+] EMBL BI503624             [                                                               ATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTAAATGAGA CCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTCAGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAAaaaaa                                                                                                                                                                                                 ]




>consensus_42#1
TTCACCGTAAAACCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAA
GATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTA
AATGAGACCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTC
AGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTT
GTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACAC
ACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGC
CATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTACTTTTTTTCTTTTTAATTGTTT
AGTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_42#0      ------------------------------------------------------------
consensus_42#1      TTCACCGTAAAACCCTCTTTCTCTTTTCAAATGGTTCACAGCTTTGCGTAGTGGTGTAAA 60
                                                                                

consensus_42#0      ------------------------------------------------------------
consensus_42#1      GATTCAGAACGTTTTTCGGGATTATTATATATGTTAGTTATTGGTTCTTTGTTTTGAGTA 120
                                                                                

consensus_42#0      ------------------------------------------------------------
consensus_42#1      AATGAGACCCCCCCCCCCTCAAAGAGGGGGCTTTAAAGGGTATTTTGGTAGGATGCAGTC 180
                                                                                

consensus_42#0      -GGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTT 59
consensus_42#1      AGGTCTCGAAAATTACTTTTCTTCAAAATGACTCGAGTAGCGAAAAATTATTAAAATTTT 240
                     ***********************************************************

consensus_42#0      GTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACAC 119
consensus_42#1      GTAACAAAAGAAATGTTTTACACACACCGAACGTACATGCGATTATTTTCCGATAGACAC 300
                    ************************************************************

consensus_42#0      ACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGC 179
consensus_42#1      ACGCTTTTTTTTTTTTACCGGAAATTCCTTCCTAAAAATCACAGTTTAACAGGCTTTCGC 360
                    ************************************************************

consensus_42#0      CATTTTCTTTTTTTCTTTTTTTTTCCTTTTTTTTTTTTACTTTTTTTCTTTTTAATTCAC 239
consensus_42#1      CATTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTTT-ACTTTTTTTCTTTTTAATT--- 416
                    ************************ ************ *******************   

consensus_42#0      GAAAGGATTTTCTGTTCCGTTTAACAAACGATGCCAAATATCTTGTAATATTCAAAGGAC 299
consensus_42#1      -------------GTTTAGTAAAAAAAAAAA----------------------------- 434
                                 ***  **  ** ***  *                             

consensus_42#0      GACTTTTCTTCTCATTTAAATCCGAAAAATGGATCGTGTCACATAAGTATCATCAGTCTT 359
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      CTTTTTTTTTTTTTTTCTCTTTGTTTACAGAAAGAACCGAGAAAGTGTGAGGTGTGTGTC 419
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      AAAGCACCCCCCTTAAATGGGGGCGCCGCTCTCGGATTAAAAAATTCGGCTTTCCTTTAA 479
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      AATTTTCGGATCTCTCTTTTTTTATATATAATAATCTCTATATAAAAAAAAATGCTTCTC 539
consensus_42#1      ------------------------------------------------------------
                                                                                

consensus_42#0      GAATCATCAACGATAGAAAA 559
consensus_42#1      --------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)