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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG]
[+] EMBL BI504100 [GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCAGCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAAGGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGAGACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACTGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGCCGCTCGAGGATCCCCGTGTACGTGGGCACGGATATTAAATCCCCACAATCGACGACCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACTCGACTGTTTCTACCGATTCTACCGG]
consensusID : consensus_442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC]
[+] EMBL BI509084 [GAGGTTAGAAATGGGAGCAGTCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATAGATTGGAAGGAGTTCATCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCCACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGCCGACAGAAATTCCGCGTGTTCCAAGTTGGCGAAGGAAAATATAGGTTTGGAGACAGTCAAAAGTTGCGATTGGTACGAATTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTTTATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTGAGAGTTTGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCCTCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCC]
consensusID : consensus_442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 487 fasta sequence
[GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG]
[+] EMBL BI516348 [GTAGGCCGGCGTCCCGACAGGGAAGCAAGCCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGGTGTCCCGTCCAGAACGAGGACACCGTCCAGTGGATCGAGCACGCCACTGCCTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGACGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGCCTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGGCAATAAACGGAGG]
[+] EMBL BI514985 [ CCACCGAGTCGATATGGATCCACTCAGTCGTTGGACAGCACCGACGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACACTCCTACATCGAGCAGGCACAACAGCGTTTCAGGGAAACGGCTTGGAACGCCTGTGAACGGGTCGAGTTCGCGGCCCCGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_442#0 GGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCATCCCGCTCCTCGCTCA 60
consensus_442#2 ------------------------------------------------------------
consensus_442#1 ------------------------------------------------------------
consensus_442#0 GCGCCGGCACGCCGGACAGCCTGAGCGACAACGAGAGTTCCTTCAAGATTGCCTCTGCAA 120
consensus_442#2 ------------------------------------------------------------
consensus_442#1 --------------------------------------------GAGGTTAGAAATGGGA 16
consensus_442#0 GGAAATCGAGCACACCGTACAGAAGCACAATGACACCTGGAGGTAGCCGGCCATCCTCGA 180
consensus_442#2 ------------------------------------------------------------
consensus_442#1 GCAG-TCGCGGACCTGTTTGACCAACACGGCGAAGGATTAATA-GATTGGAAGGAGTTCA 74
consensus_442#0 GACCGGCTTCGAGACCAGCATCCAGACCGACCAGCAGGCCCGGAAGTAGGCCGGCGTCCC 240
consensus_442#2 ---------------------------------------------GTAGGCCGGCGTCCC 15
consensus_442#1 TCGCAGCTTTGAGACCAGATTGGGAAGAACGTAGGACGTACAATGATACGGACAAGATCC 134
** * * **
consensus_442#0 GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-TGA 298
consensus_442#2 GACAGGGAAGCAAGCCACCGA-GTCGATATGGATCCACTCAGTCGTTGGACAGCAC-CGA 73
consensus_442#1 ACGATGAAGTGAAACGATTGGTGATGCTCTGTACTTGC-CGACAGAAATTCCGCGTGTTC 193
* * * ** * * * * * * ** * * * * * **
consensus_442#0 CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 358
consensus_442#2 CGAATCGACGAACGTGAGCCGTATTCCGCGGAGAACGGCGGTGAGCACGACGGGAAACAC 133
consensus_442#1 CAAGTTGGCGAAGGAAAATATAGGTTT--GGAGACAGTCAAAAGTTGCGATTGGTACGAA 251
* * * * **** * * * ***** * * *** ** * *
consensus_442#0 TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 409
consensus_442#2 TCCTAC-ATCGAGCA----GGCACAACAGCGTTTCAGGGAAACGGCTTGGAACG----CC 184
consensus_442#1 TTCTACGATCGACCGTAATGGTACGAGTCGGTGGTGGTTGGGTAGCTTTGGACGAATTTT 311
* **** ***** * ** ** * ** * **** * ***
consensus_442#0 TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 469
consensus_442#2 TGTGAACGGGTCGAGTTCGCGGCCCCGAACACCCACAGGGCTTGTTAGCCCCGCGAGTGG 244
consensus_442#1 TATTAAAAAATGATCCTTGCCGCGCGGAGGAGTTTATGAGCCAGCTGACGCCGATTTTTG 371
* * ** * * ** ** * ** * * ** * * * *** * *
consensus_442#0 TGTCCCGTCCAGCCGCTCGAGGATC-CCCGTGTACGTGGGCA---CGGATATTAAATCCC 525
consensus_442#2 TGTCCCGTCCAGAA---CGAGGA-C-ACCGTCCA-GTGGAT----CGAGCACGCCACTGC 294
consensus_442#1 AGAGTT-TGAGGCAAAAGGAGGACCTCCCGTGCTCGTATCCCCTCCACATGCACGCCCCC 430
* * * ***** * **** ** * *
consensus_442#0 CACAATCGACGA--CCAGCAATATTTCCACTCATTCTACGCAAAGCAACCACT-CGACTG 582
consensus_442#2 CTCCATCGTTGAAGCTGTCCAGGAAGCCATCCGGTGCATCGGACACGTCCGTTTCGACGA 354
consensus_442#1 TCTTATCATTGGGTAAGGGAGCGAAGCGCGCGAAGCGTTCCAATGGGACAATCGCGGGCA 490
*** * * * * **
consensus_442#0 TTTCTACCGATTCTACCGG----------------------------------------- 601
consensus_442#2 CGACAACGACACCCGCCTCCCATCGAAAAGGAAAACCGACCCCGGTCGATCAACGCGCGC 414
consensus_442#1 TCC--------------------------------------------------------- 493
consensus_442#0 ------------------------------------------------------------
consensus_442#2 CTTTCCGTTTATAGTAGTCGTCGCACGCCAATTCGAGATCAAAAAGAGAAAAAAAATAGG 474
consensus_442#1 ------------------------------------------------------------
consensus_442#0 -------------
consensus_442#2 CAATAAACGGAGG 487
consensus_442#1 -------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |