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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence
[CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG]
[+] EMBL BI506206 [CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAAAA ]
[+] EMBL BI503984 [ TGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGATCTTATATATATATATATATATATATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGATAACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCCCCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAATGAGAAAGATG]
consensusID : consensus_444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA]
[+] EMBL BI504384 [GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGGCCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTACGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAA]
consensusID : consensus_444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA]
[-] EMBL BI504711 [CGACATAATCATCGCCAATTGTCTCGATCTGGAAAACGAGATTATATTTAATCCTCTTCGTGTCTTTTTTCCTCCGCAGCTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCATCTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAGTCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCAATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCAGAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGGAGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTACGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAATAATAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_444#1 GTACGGGGCTACTTATCAGACCACGGGCGGAAATCTCGGTGTACCAGGTGCGAATGGCGG 60
consensus_444#2 ------------------------------------CGACATAATCATCGCCAATTGT-- 22
consensus_444#0 ------------------------------------------------------------
consensus_444#1 CCCAGTGAACCCGACGAATCCATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 119
consensus_444#2 CTCGATCTGGAAAACGAGATTATATTTAATCCTCTT---CGTGTCTTTTTTCCTCCGCAG 79
consensus_444#0 --------------------CATTTCTGAACAGCGGAGGCGCAGGCGAATATAATTAC-G 39
** * * * * * ** * * *
consensus_444#1 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 179
consensus_444#2 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 139
consensus_444#0 CTTTACAATGAGGTGATCAGAGAATTGGACCTGTTTAAACCACCGCCGATAGTGACCCAT 99
************************************************************
consensus_444#1 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 239
consensus_444#2 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 199
consensus_444#0 CTACACGCTCAACAACCATGCACCAACCCTTTCCATCAGGACGACTACGAGTGGTAACAG 159
************************************************************
consensus_444#1 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 299
consensus_444#2 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 259
consensus_444#0 TCCGGGATGTTCGATCCCACTTGAGGTTCGATCAGGATGCTCGTGGAACGTTGGTCGGCA 219
************************************************************
consensus_444#1 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 359
consensus_444#2 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 319
consensus_444#0 ATCGGCCCGTTCACCAGAAGAGAACCAACGAACGAAGGACCAGCTTCGAAGTGCTAGGCA 279
************************************************************
consensus_444#1 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 419
consensus_444#2 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGAAAACCCTTTGGTGCCTCCTTGG 379
consensus_444#0 GAAGAAATTTTTACGGTCAAGCAGGCTAGGTTAATTGGAAACCCTTTGGTGCCTCCTTGG 339
************************************* **********************
consensus_444#1 AGGGGCGACGATATCATTCCTTGCATTTTAAATTANNAACTTAAATTTGCTAATTAACTA 479
consensus_444#2 AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTAATTAACTA 439
consensus_444#0 AGGGGCGACGATATCATTCCTTGCATTTTAAATTAGAAACTTAAATTTGCTGATTAACTA 399
*********************************** ************** ********
consensus_444#1 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 539
consensus_444#2 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAGAAGAGAAT 499
consensus_444#0 CGGGATGGAAATTATCGCTTTCGACGAATCGATCTCGACGTTATATATAAAAAAAAAAAA 459
*************************************************** ** * **
consensus_444#1 AA-TAAAAAAAAAA---------------------------------------------- 552
consensus_444#2 AA-TAAAAAAAAAAAA-------------------------------------------- 514
consensus_444#0 AAATATATAAAGAAGAGAATAATAAAAAGAAAATTCGATTGATAAGTGATCGAAATAGAT 519
** ** * *** **
consensus_444#1 ------------------------------------------------------------
consensus_444#2 ------------------------------------------------------------
consensus_444#0 AACATTGAAACAAAAAAATATTGACCGTGATCGATAGAATGACGAAAAGTGCCTGTTCCC 579
consensus_444#1 ------------------------------------------------------------
consensus_444#2 ------------------------------------------------------------
consensus_444#0 CCGAGATGTTGTTGTTAAATGTATTATCGAAAGGATCATAATGCGTTATATCGCAAAAAA 639
consensus_444#1 -----------
consensus_444#2 -----------
consensus_444#0 TGAGAAAGATG 650
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |