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Apis mellifera
cluster # 484 cluster # 484       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_484#0 length = 906 sequences # 3  
 consensus_484#1 length = 542 sequences # 1  
consensusID : consensus_484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 906
fasta sequence 
                              [CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAAAAATCCTGAAAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTATAAAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTA-A--CAAAGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC-GC-ATGAAATGTGAAAAAGTAAATG--TTATTAAATTATAAAATAAAGTTCTGTAAAATGTAAAATGAAATTA]

[-] EMBL BQ103814             [CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAATCATCCTG AAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCTGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCCCGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTATAAAAAAAAAAAAGAAGGAAAT       ATTAATCTTTATATTAAAATTTATATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATTTTATATTCAAAACAAAACCTGTGAAATTGATATTAAAACATATAATTTCAATTTCTGCTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAATTCTGTAAAATATAAAATGAAATTA]
[+] EMBL BI511720             [                                                cAAATCCTGAAAAGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACGACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACAGGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTNNNAAGGATTATGACCCTCTTGTCTCCTATGGGAAACCTGACGGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BQ103765             [                                                                                                                                                                                                     AGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAGCTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAATCGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGATGCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTCCTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAGAATT CAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAAAAAAATTTAT ATAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTTATATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATT       CAGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC     TGAAATGTGAAAAAGTAAATG  TT TTAAATTATAAAATAAAGTTCTGTAAAATGTAAAATGAA    ]




>consensus_484#0
CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAAAAATCCTGAAA
AGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACG
ACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACA
GGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAG
CTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAAT
CGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGAT
GCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTC
CTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTT
GGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCG
AGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTT
GCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAA
AAAAATTTATAAAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTT
GTATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATA
TATATTAACAAAGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTCGCAT
GAAATGTGAAAAAGTAAATGTTATTAAATTATAAAATAAAGTTCTGTAAAATGTAAAATG
AAATTA

consensusID : consensus_484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence 
                              [GGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAAAATTCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAAAAAAATTTATAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCTGGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATTCTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATTCTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT]

[-] EMBL BQ103813             [GGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCGAAAATTCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTTGCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAAAAAAATTTATAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTTGTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATATATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCTGGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATTCTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATTCTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT]




>consensus_484#1
GGTTCTCTTTGGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACT
ATGTTGGTCGAAAATTCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCA
TATATTCTTGCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACT
ATTAATGAAAAAAATTTATAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATT
AAAATTTGTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAAT
ATATATATATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTC
AATTTCTGGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTG
TAAAATTCTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCT
TAACATTCTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAA
TT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_484#0      CTCCACCCACGATATCGCGAAATGTTGTCGCGATTACGAGGTCCCCAAAAAATCCTGAAA 60
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      AGATTGTCGTCGTTTCTGGCCATATCGATAGTTGGGACGTTGGTCTAGGAGCAATGGACG 120
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      ACGGTGGTGGTGCATTCATTTCGTGGTATGCTGTGAAACTATTGAAATATCTTAATTACA 180
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      GGCCACGACGAACAGTAAGATTGATCATGTGGACAGCAGAAGAAATGGGATATGTAGGAG 240
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      CTCTAGATTTCATCAAGAACCATAAATCTGAACAAAATAACTTACAGTTTGTAATGGAAT 300
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      CGGATTCAGGCACGTTCACGCCTTTGGGCATTGAATATACCGGTACAGATATAGTTGGAT 360
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      GCATCTTAGAAAGGATTATGACCCTCTTGTCTCCTATGGGAAACTTGACTGTTCGCAGTC 420
consensus_484#1      ------------------------------------------------------------
                                                                                 

consensus_484#0      CTAACCAAGGACCCGATATCTCCACTTGGATAAACGAAGGTGTACCAGGAGGTTCTCTTT 480
consensus_484#1      --------------------------------------------------GGTTCTCTTT 10
                                                                       **********

consensus_484#0      GGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCG 540
consensus_484#1      GGAATCAGGATGATAAATATTTTTATTACCATCACACGAAGGCGGATACTATGTTGGTCG 70
                     ************************************************************

consensus_484#0      AGAATTCCAGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTT 600
consensus_484#1      AAAATTC-AGATTCTCTTGACAAAGGAACAGCTCTTTTTGCTGCAGTGGCATATATTCTT 129
                     * ***** ****************************************************

consensus_484#0      GCTGATCTTAGCGTAGATTTACCACGACACAAATGATGAAACTGTTATATTATTAATGAA 660
consensus_484#1      GCCGATCTTAGCATAGATTTACCACGACACAAATGATGAAACTGTTATACTATTAATGAA 189
                     ** ********* ************************************ **********

consensus_484#0      AAAAATTTATAAAAAAAAAAAAGAAGGAAATATTTATGATTAATCTTTATATTAAAATTT 720
consensus_484#1      AAAAATTTATAAAAAAAAAA--GAAGGAAATATTTATGATTAATCTTTATATTAAAATTT 247
                     ********************  **************************************

consensus_484#0      GTATAATTTTTGTATGAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATA 780
consensus_484#1      GTATAATTTTCATATAAAATGTGAAATAATGAATAATGAAAAACAGAATGAATATATATA 307
                     **********  *** ********************************************

consensus_484#0      TATATTAACAA---AGCAAAACCTGTGAAATTGATATTAGAACATATAATTTCAATTTC- 836
consensus_484#1      TATATTTATTATTCAGCAAAACCTGTGAAATTGATATTAGAATATATAATTTCAATTTCT 367
                     ****** *  *   **************************** **************** 

consensus_484#0      -GCATGAAATGTGAAAAAGTAAATGTT--ATTAAATTATAAAATAAAGTTCTGTAAAAT- 892
consensus_484#1      GGTATGAAATGTGAAAAAGTAAATGTTTTATTAAATTATAAAATAAAGTTTTGTAAAATT 427
                      * ************************  ********************* ******** 

consensus_484#0      ---------GTAAAATGAAATTA------------------------------------- 906
consensus_484#1      CTGTAATCTGTAAAATGAAATTAAAGGTTAAAGAAATGAAATTCTGATTCGCTTAACATT 487
                              **************                                     

consensus_484#0      -------------------------------------------------------
consensus_484#1      CTATGTTCATATCAATGGAATAGAATAAATAAAAACTAGAACATTGTTGAAAATT 542


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)