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Apis mellifera
cluster # 519 cluster # 519       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_519#0 length = 439 sequences # 2  
 consensus_519#1 length = 398 sequences # 2  
consensusID : consensus_519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence 
                              [ACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGCATGTCCAGATGAATTGTTCAAAGAATTGTGTCACTCGCTGGTAGCTAAACGCATAAAGACACTAAAAGAGATCAACATCGCTTTCATACCGTACGAAGAACAGGTTTTCTCCTTGGATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCCTTTTCCAACTTGAGAACGGCCAATATGGAAAGAATAGCTGAACAAATTGCAACACTTTGTGCTACTCTTGGAGAATATCCATCAGTTAGAAAAAAAAAAAA]

[+] EMBL BI506258             [ACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGCATGTCCAGATGAATTGTTCAAAGAATTGTGTCACTCGCTGGTAGCTAAACGCATAAAGACACTAAAAGAGATCAACATCGCTTTCATACCGTACGAAGAACAGGTTTTCTCCTTGGATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCCTTTTCCAACTTGAGAACGGCCAATATGGAAAGAATAGCTGAACAAATTGCAACACTTTGTGCTACTCTTGGAGAATATCCATCAGTTAGAAAAAAAAAAAA]
[+] EMBL BI510296             [ACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGCATGTCCAGATGAATTGTTCAAAGAATTGTGTCACTCGCTGGTAGCTAAACGCATAAAGACACTAAAAGAGATCAACATCGCTTTCATACCGTACGAAGAACAGGTTTTCTCCTTGGATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCCTTTTCCAACTTGAGAACGGCCAATATGGAAAGAATAGCTGAACAAATTGCAACACTTTGTGCTACTCTTGGAGAATATCCATCAGTTAGAAAAA       ]




>consensus_519#0
ACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTT
TGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAA
TCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAG
AAGCATGTCCAGATGAATTGTTCAAAGAATTGTGTCACTCGCTGGTAGCTAAACGCATAA
AGACACTAAAAGAGATCAACATCGCTTTCATACCGTACGAAGAACAGGTTTTCTCCTTGG
ATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCCTTTTCCAACTTGAGAACGGCCA
ATATGGAAAGAATAGCTGAACAAATTGCAACACTTTGTGCTACTCTTGGAGAATATCCAT
CAGTTAGAAAAAAAAAAAA

consensusID : consensus_519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence 
                              [GATAAATTGGCCATGAGGATGGTATCTGCGTGTTGTAAAATGCACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGTGTGTCCGGAGGAGCTGTTCAATGAACTCTGCAAGTCTCTCGCCGCTAAAAAGATCAAAACCCTGAAAGAGATCAACATCGCTTTCTTGCCTTACGAATCGCAGGTTTTCTCCTTGGATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCAGCCGAATCAAAAAAAAA]

[+] EMBL BI503510             [GATAAATTGGCCATGAGGATGGTATCTGCGTGTTGTAAAATGCACGATATCAGTGCACAAGGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGTGTGTCCGGAGGAGCTGTTCAATGAACTCTGCAAGTCTCTCGCCGCTAAAAAGATCAAAACCCTGAAAGAGATCAACATCGCTTTCTTGCCTTACGAATCGCAGGTTTTCTCCTTGGATTCGGCTGAAACATTTGCTTGCTTTTATAATGCTTCAGCCGAATCAAAAAAAAA]
[+] EMBL BI505573             [                                                                                                             CCATGGAAGCAATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAATCCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGTGTGTCCGGAGGAGCTGTTCAATGAACTCTGCAAGTCTCTCGCCGCTAAAAAGAT                                                                                                                     ]




>consensus_519#1
GATAAATTGGCCATGAGGATGGTATCTGCGTGTTGTAAAATGCACGATATCAGTGCACAA
GGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCA
ATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAAT
CCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGTGTGTCCGGAGGAG
CTGTTCAATGAACTCTGCAAGTCTCTCGCCGCTAAAAAGATCAAAACCCTGAAAGAGATC
AACATCGCTTTCTTGCCTTACGAATCGCAGGTTTTCTCCTTGGATTCGGCTGAAACATTT
GCTTGCTTTTATAATGCTTCAGCCGAATCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_519#0      -------------------------------------------ACGATATCAGTGCACAA 17
consensus_519#1      GATAAATTGGCCATGAGGATGGTATCTGCGTGTTGTAAAATGCACGATATCAGTGCACAA 60
                                                                *****************

consensus_519#0      GGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCA 77
consensus_519#1      GGCATTACCTTAGTAGAAGATATCAACAAGAAACGGGAACCTTTGCCTACCATGGAAGCA 120
                     ************************************************************

consensus_519#0      ATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAAT 137
consensus_519#1      ATCTACCTGATCACACCATGCAATTCCTCTGTCCAAAAGTTAATCGAAGACTTCAGTAAT 180
                     ************************************************************

consensus_519#0      CCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGCATGTCCAGATGAA 197
consensus_519#1      CCTACCAGGACTTCTTACAAAGTAGCCCATGTTTATTTCACAGAAGTGTGTCCGGAGGAG 240
                     **********************************************  ***** ** ** 

consensus_519#0      TTGTTCAAAGAATTGTGTCACTCGCTGGTAGCTAAACGCATAAAGACACTAAAAGAGATC 257
consensus_519#1      CTGTTCAATGAACTCTGCAAGTCTCTCGCCGCTAAAAAGATCAAAACCCTGAAAGAGATC 300
                      ******* *** * **  * ** ** *  ******   ** ** ** ** *********

consensus_519#0      AACATCGCTTTCATACCGTACGAAGAACAGGTTTTCTCCTTGGATTCGGCTGAAACATTT 317
consensus_519#1      AACATCGCTTTCTTGCCTTACGAATCGCAGGTTTTCTCCTTGGATTCGGCTGAAACATTT 360
                     ************ * ** ******   *********************************

consensus_519#0      GCTTGCTTTTATAATGCTTCCTTTTCCAACTTGAGAACGGCCAATATGGAAAGAATAGCT 377
consensus_519#1      GCTTGCTTTTATAATGCTTCAG---CCGAATCAAAAAAAAA------------------- 398
                     ********************     ** * *  * **                       

consensus_519#0      GAACAAATTGCAACACTTTGTGCTACTCTTGGAGAATATCCATCAGTTAGAAAAAAAAAA 437
consensus_519#1      ------------------------------------------------------------
                                                                                 

consensus_519#0      AA 439
consensus_519#1      --


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)